PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m011323
Common NameLOC8258439, RCOM_1673780
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 174aa    MW: 18953.3 Da    PI: 10.3335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m011323genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-201565256
            AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  30190.m011323 15 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 65
                   69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-221573IPR016177DNA-binding domain
PfamPF008473.0E-131564IPR001471AP2/ERF domain
SMARTSM003806.3E-351578IPR001471AP2/ERF domain
CDDcd000187.88E-301573No hitNo description
PROSITE profilePS5103222.7211572IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-321572IPR001471AP2/ERF domain
PRINTSPR003675.0E-111627IPR001471AP2/ERF domain
PRINTSPR003675.0E-113854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MASSSSSSST TREGHYRGVR KRPWGRYAAE IRDPWKKTRV WLGTFDTPEE AALAYDGAAR  60
SLRGAKAKTN FPAPPTALSL DLNVPSDHSH HHHRWASASP SGHRFALGEF LQTGVLKEFT  120
FKGEPSSSQM KNETVVVPGV GGAPLPENSG QASFLGIVRR GLPIDLNEPP PLWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-211572563ATERF1
3gcc_A1e-211572563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m011323
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025011940.11e-125ethylene-responsive transcription factor 12
SwissprotQ94ID65e-50ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLB9RBB01e-123B9RBB0_RICCO; Ethylene-responsive transcription factor, putative
STRINGXP_002509444.11e-124(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-47ERF domain protein 12