PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30193.m000709

Common Name

RCOM_1698150

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NAC

Protein Properties

Length: 349aa MW: 39774.7 Da PI: 6.5182

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30193.m000709	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.1	2.4e-51	57	181	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lp+GfrFhPtd+elv++yL++k++g+++++ +i+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + 30193.m000709 57 LPAGFRFHPTDDELVNHYLCRKCAGQSISV-PIIAEIDLYKHDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGK-- 149 799*************************.88***********7666789*********************************98.. PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + g+kk Lvfy g+apkg kt+W+mheyrl 30193.m000709 150 PKPLGIKKALVFYAGKAPKGIKTNWIMHEYRL 181 789*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-61	53	207	IPR003441	NAC domain
PROSITE profile	PS51005	58.991	57	207	IPR003441	NAC domain
Pfam	PF02365	5.9E-27	58	181	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MPKRHEPTLE WGQGSDGSND RNYHTSSSEL KAATGKREEN KQKREKEVEM KGAELDLPAG 60 FRFHPTDDEL VNHYLCRKCA GQSISVPIIA EIDLYKHDPW QLPEMALYGE KEWYFFSPRD 120 RKYPNGSRPN RAAGSGYWKA TGADKPIGKP KPLGIKKALV FYAGKAPKGI KTNWIMHEYR 180 LANVDRSAGK KTNLRLDDWV LCRVYNKKGS MEKHQPVSDR KLLKYPEAEE DQKPDILIYG 240 DKAISTFGPS IMNDSSNNDL LAHMDTTSDS VPRLHTDSSC SEEHVLSPEK EVQSEPNWNA 300 LDSNALDFGF NYLVDGGFQD YDPFASQVQF QMDQLSPLQD MFMFLQKPF

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MPKRHEPTLE WGQGSDGSND RNYHTSSSEL KAATGKREEN KQKREKEVEM KGAELDLPAG  60
FRFHPTDDEL VNHYLCRKCA GQSISVPIIA EIDLYKHDPW QLPEMALYGE KEWYFFSPRD  120
RKYPNGSRPN RAAGSGYWKA TGADKPIGKP KPLGIKKALV FYAGKAPKGI KTNWIMHEYR  180
LANVDRSAGK KTNLRLDDWV LCRVYNKKGS MEKHQPVSDR KLLKYPEAEE DQKPDILIYG  240
DKAISTFGPS IMNDSSNNDL LAHMDTTSDS VPRLHTDSSC SEEHVLSPEK EVQSEPNWNA  300
LDSNALDFGF NYLVDGGFQD YDPFASQVQF QMDQLSPLQD MFMFLQKPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-85	42	213	3	174	Stress-induced transcription factor NAC1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30193.m000709

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015577112.1	0.0	NAC domain-containing protein 2
Swissprot	Q39013	1e-122	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	B9SAA0	0.0	B9SAA0_RICCO; NAC domain-containing protein, putative
STRING	XP_002522919.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1258	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-114	NAC family protein

Link Out ? help Back to Top
Phytozome	30193.m000709

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]