PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30199.m000879
Common NameLOC8280535, RCOM_1708810
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family M-type_MADS
Protein Properties Length: 251aa    MW: 28708.1 Da    PI: 9.8494
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30199.m000879genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF565.1e-181150342
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                   i+n++ r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  30199.m000879 11 ISNDTARKATFKKRKKGLMKKVSELSTLCGVDACAIIYSP 50
                   9**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.92E-25185IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.465149IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-26160IPR002100Transcription factor, MADS-box
CDDcd002663.84E-23285No hitNo description
PRINTSPR004044.7E-10323IPR002100Transcription factor, MADS-box
PfamPF003195.1E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MTRKKVKLAY ISNDTARKAT FKKRKKGLMK KVSELSTLCG VDACAIIYSP YDAQPEVWPS  60
AIEVQRVLSQ FKNMPEMEQS KKMVNQESFL RQRIGKANEQ LKKQRKDNRE KEVTQVMFQS  120
LTGKTLNNLN MMDLNDLGWI INQYLKDIYK KVETVSKEIN RQVTAAPPPP SPPPQQLPPP  180
SGPAQAIAEV APSQQAAERQ AFEVNMEAMQ RQQWIMDLIN PHENMGFIGD EMMLPFGDHN  240
HNSLWSNAFF P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYISNDTARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30199.m000879
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520092.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK36e-68AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLB9S2730.0B9S273_RICCO; Mads box protein, putative
STRINGXP_002520092.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-54AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]