PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30202.m000250

Common Name

RCOM_1715600

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

HB-other

Protein Properties

Length: 53aa MW: 6092.07 Da PI: 10.241

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30202.m000250	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.5	7.1e-06	35	52	2	19
T--SS--HHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelF 19 r+R+t+t+ ql++Le+ F 30202.m000250 35 RQRWTPTPVQLQILERIF 52 89**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 53 aa Download sequence Send to blast
MHKTLSAQQD LVGGRLGNLY CDPLMTSGRH KITARQRWTP TPVQLQILER IFD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30202.m000250

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002521723.1	3e-30	WUSCHEL-related homeobox 13 isoform X2
Refseq	XP_015576335.1	3e-30	WUSCHEL-related homeobox 13 isoform X1
Refseq	XP_015576336.1	3e-30	WUSCHEL-related homeobox 13 isoform X3
Refseq	XP_015576337.1	2e-30	WUSCHEL-related homeobox 13 isoform X4
Swissprot	O81788	3e-25	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	B9SU48	7e-32	B9SU48_RICCO; Uncharacterized protein
STRING	XP_002529517.1	1e-32	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-27	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	30202.m000250

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]