PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30204.m001751

Common Name

LOC8264946, RCOM_1719870

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Trihelix

Protein Properties

Length: 291aa MW: 34344.7 Da PI: 4.7623

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30204.m001751	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.7	1.7e-19	34	121	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ +Li+a++e++ +l+rg+lk+++Weev++ + + + ++ +qC++k+e+l+kry++++++ + + + ++yfd ++ 30204.m001751 34 WTHQETVHLIQAYQEKWYSLKRGQLKANQWEEVAETVaarcgyEYNHLAKTVIQCRHKMEKLRKRYREERRRLSLN---GTCFWQYFDLMD 121 ***********************************988888888889*********************9984...455799999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.3E-20	33	123	No hit	No description
SMART	SM00595	1.7E-7	41	128	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MATPSPSPSP PPPAEPPPYS SKPRTTKKPH PVPWTHQETV HLIQAYQEKW YSLKRGQLKA 60 NQWEEVAETV AARCGYEYNH LAKTVIQCRH KMEKLRKRYR EERRRLSLNG TCFWQYFDLM 120 DSLERGPLPI SARPLTLIPG NDDNEEDDDE EEEEEEEEEY GYRSRSLSIN YILQKPTIVN 180 RFAGSDSRLL PAVMNKRKRE EIVEEEEQEE EEEEDSGKSV ELELAGEIRA FTERIVGMER 240 KKMQMMKETE RWRMEMENKR IEMILDSQRK IVDMISTAFG SPEDLKMEQE F

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30204.m001751

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002521086.1	0.0	trihelix transcription factor ASIL1
TrEMBL	B9S517	0.0	B9S517_RICCO; Transcription factor, putative
STRING	XP_002521086.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	4e-40	Trihelix family protein

Link Out ? help Back to Top
Phytozome	30204.m001751
Entrez Gene	8264946