PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30204.m001816
Common NameLOC8262777, RCOM_1722420
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 572aa    MW: 62604.4 Da    PI: 6.3673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30204.m001816genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.19.8e-16364410455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  30204.m001816 364 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 410
                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.044360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-16363414No hitNo description
SuperFamilySSF474591.24E-20363438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-13364410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-21364421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MSHYVPDFEM DDDCAIPTSS TLVRPKKSIT STEDEFMELL WHNGQVVVQT QSLKKPQQQH  60
HKYDDAVIPV DQSNPRDVIR TAQEHHNHNN NSNNNNNNNN NTHNSNLFMQ EDEMASWLHY  120
PINDTNFDQD FCADLLYPTS AAAACVTSTT TNTTTTTTTN NSFAPVRSLH NPEIRSQQPP  180
VSATATASRP PIPPTRRAQV VQNFAYFSRH RARDGANVAE SGPSKVKPVA RESTVVDSSE  240
TPEGIALDSR ISEAAFGRST SGGDNGGVGG AAAACGASSR GNNNNNNREM TTTCEMTVTS  300
SPGGSSASAE PPQPQRPPAD DRKRKGREEE TEYYHSEDVE FESADAKKQA RGSTSTKRSR  360
AAEVHNLSER RRRDRINEKM RALQELIPRC NKSDKASMLD EAIEYLKSLQ LQVQMMSMGC  420
SMVPMMFPGI QQYMPPMGMG MGIGMGMEMG MSRPMMPFPN VLSGAPLPTQ AAAAAHLGPR  480
FHMPAFHMPP VPAPDPSRIQ AASQSDPMVS AISTQNPNQP RLPNFVDPYQ QYLGLQQLQI  540
PVPENQAMAQ PSTSKPGANQ GAENLDNHQS GT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368373ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30204.m001816
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521150.10.0transcription factor PIF1
RefseqXP_015575958.10.0transcription factor PIF1
TrEMBLB9S5810.0B9S581_RICCO; Phytochrome-interacting factor, putative
STRINGXP_002521150.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-68phytochrome interacting factor 3-like 5