PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30206.m000769
Common NameRCOM_1731940
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 408aa    MW: 47683.5 Da    PI: 5.7452
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30206.m000769genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.22.7e-2942126187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+laL+++r++m+ ++r+++lk+plW+evs+k++e g++rs+k+Ckek+en+ k+++++keg+++++  + +++++f+qlea
  30206.m000769  42 RWPRQETLALLKIRSDMDFAFREAALKAPLWDEVSRKLSELGYNRSAKKCKEKFENIYKYHRRTKEGRSGKA--NCKSYRFFEQLEA 126
                    8********************************************************************974..45569******85 PP
2trihelix101.75.9e-32242326186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW+k+e+ aLi++r++++ +++++  k+plWee+s++m++ g++r++k+Ckekwen+nk++k++ke++k+r +++ +tcpyf+ql+
  30206.m000769 242 RWPKEEIEALIRLRTNLDIQYQDSGPKGPLWEEISAAMKKLGYNRNAKRCKEKWENMNKYFKRVKESNKRR-PDDAKTCPYFQQLD 326
                    8********************************************************************97.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.02239101IPR001005SANT/Myb domain
PfamPF138377.6E-1941127No hitNo description
CDDcd122035.25E-2341106No hitNo description
PROSITE profilePS500907.124199IPR017877Myb-like domain
SMARTSM007171.1E-4239301IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-6240299IPR009057Homeodomain-like
SuperFamilySSF466894.02E-5241307IPR009057Homeodomain-like
PfamPF138371.5E-22241327No hitNo description
CDDcd122032.44E-25242306No hitNo description
PROSITE profilePS500907.758242299IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MEISTLPENS RSGAAATGNR ENEENEERVK VEEADRYLMG NRWPRQETLA LLKIRSDMDF  60
AFREAALKAP LWDEVSRKLS ELGYNRSAKK CKEKFENIYK YHRRTKEGRS GKANCKSYRF  120
FEQLEALDNH QQESLQRKFL DAIEKCEQDR MAREEAWKMQ ELDRIKRERE LLVQERSIAA  180
AKDAAVLSIL QKFSDQASSV QLPENQIVQV QPTENQVVSI EKVVKAQENN NVENYVQLGS  240
TRWPKEEIEA LIRLRTNLDI QYQDSGPKGP LWEEISAAMK KLGYNRNAKR CKEKWENMNK  300
YFKRVKESNK RRPDDAKTCP YFQQLDVLYR QKTRKVDKSV ISGQELKPEE LLMHMMVGQE  360
ERQQQGSATT EEGESLNVDQ NQEDDRENDN EDNFRVVAND PSSVAMID
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30206.m000769
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576647.20.0LOW QUALITY PROTEIN: trihelix transcription factor GT-2-like
SwissprotQ391173e-67TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLB9S8820.0B9S882_RICCO; Uncharacterized protein
STRINGXP_002522201.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-76Trihelix family protein