PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30217.m000254
Common NameRCOM_1749900
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 163aa    MW: 18388.2 Da    PI: 11.1895
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30217.m000254genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.6e-11105146149
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                    +  +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++ 
  30217.m000254 105 CVMRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRK 146
                    568***99..47*********4.....5******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-5105145IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-8106154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-5108154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVSLRRRKLL GLCAGRSSFL TPLPRFFDNG AAHVSSTQRS VSVHPLPSDD IKQPGEKNIV  60
KVGVGLSNIS ASSSSKEQQS QPYPGQPIKR RKRHRRKHVQ NQEQCVMRGV YFKNMKWQAA  120
IKVDKKQIHL GTVGSQEEAA RLYDRKSHHF YKSNVALLDS IAL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30217.m000254
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4738991e-50AM473899.2 Vitis vinifera contig VV78X141869.21, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015507.11e-105ethylene-responsive transcription factor-like protein At4g13040 isoform X2
SwissprotQ56XP93e-19ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLB9T3B71e-117B9T3B7_RICCO; DNA binding protein, putative
STRINGXP_002532736.11e-118(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.13e-24ERF family protein