PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30225.m001683
Common NameRCOM_1761170
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 218aa    MW: 24669.6 Da    PI: 4.5644
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30225.m001683genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw++yl
    30225.m001683 14 KGTWTPEEDRKLMAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWLNYL 61
                     799*****************99************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129422.888965IPR017930Myb domain
SMARTSM007171.9E-101363IPR001005SANT/Myb domain
PfamPF002495.1E-141461IPR001005SANT/Myb domain
SuperFamilySSF466892.07E-211588IPR009057Homeodomain-like
CDDcd001672.40E-91661No hitNo description
PROSITE profilePS500904.316289IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.6E-86587IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVRTPCCDKS GLKKGTWTPE EDRKLMAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWLNY  60
LRPNIKRGNY TKEEEDTILK LHASLGNSQI VDTKPITDPI YINPATPQTS ESSTLSPKQS  120
SSSDNSSIAT DNIAVMSSSD SNSDDFSFLE AYEAPVGNFW TEPFLADNYY MPSDQFSLMP  180
LLDDPLPLFL DGEILYPYGL NEQSNMEDGT SNLYKAYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-141287579B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30225.m001683
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571052.11e-123transcription factor MYB4
TrEMBLB9RHL81e-161B9RHL8_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002513237.11e-161(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.13e-41myb domain protein 107