PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30225.m001687
Common NameRCOM_1761410
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 138aa    MW: 16020.9 Da    PI: 8.2222
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30225.m001687genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151466148
                     TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++l  ++ ++G         W++Ia+ ++ gRt++++k++w+++l
    30225.m001687 14 KGAWSREEDDKLRAYILKYGHWnwrelpKWSKIAAQLP-GRTDNEVKNYWHTHL 66
                     79******************66****************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.848970IPR017930Myb domain
SuperFamilySSF466895.89E-14972IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-211267IPR009057Homeodomain-like
SMARTSM007171.1E-121368IPR001005SANT/Myb domain
PfamPF002493.4E-131466IPR001005SANT/Myb domain
CDDcd001671.35E-111666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MVRGPFIDKN GLKKGAWSRE EDDKLRAYIL KYGHWNWREL PKWSKIAAQL PGRTDNEVKN  60
YWHTHLKKRT QRTQSKSGSK EQHPVKQLTE ITPQSDIYEV ESTSSNCFAE DCLSSLEITE  120
SASGDFWTQP FLTDKDGM
Cis-element ? help Back to Top
SourceLink
PlantRegMap30225.m001687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347071e-34KM034707.1 Jatropha curcas clone JcMYB087 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571053.15e-82transcription factor MYB15
TrEMBLB9RHM02e-99B9RHM0_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002513239.11e-100(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.12e-22myb domain protein 13