PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30225.m001689
Common NameRCOM_1761730
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 203aa    MW: 23526.2 Da    PI: 7.214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30225.m001689genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-091448136
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     +g+W++eEd++l   v  +G ++W++ +r  g +Rt
    30225.m001689 14 KGAWSQEEDDKLRSHVLNYGHRNWRKLPRFAG-RRT 48
                     79******************************.998 PP
2Myb_DNA-binding28.24.3e-0952732446
                     HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                     W++Ia +++ gRt++++k++w++
    30225.m001689 52 WSKIATKLP-GRTDNEIKNHWHT 73
                     *********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.49979IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-111248IPR009057Homeodomain-like
SMARTSM007177.0E-121377IPR001005SANT/Myb domain
SuperFamilySSF466891.19E-131476IPR009057Homeodomain-like
PfamPF002493.7E-71448IPR001005SANT/Myb domain
CDDcd001672.20E-101673No hitNo description
PfamPF002491.8E-65274IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-125287IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVRTVCVDKN GLKKGAWSQE EDDKLRSHVL NYGHRNWRKL PRFAGRRTFL IWSKIATKLP  60
GRTDNEIKNH WHTQLKKREK HSESTSELME NQPNKTPQSV ITVPSENLQP ERAVSYNAPF  120
RPIILESSPL PHEGSQNSLF WGGINRVSED CTLTSMDIFE DSGQDFWTQP FVADKDGDYK  180
GDGYYSFYHS SNDDNMDLIT QKY
Cis-element ? help Back to Top
SourceLink
PlantRegMap30225.m001689
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571045.11e-138transcription factor MYB15
TrEMBLB9RHM21e-152B9RHM2_RICCO; DNA binding protein, putative
STRINGXP_002513241.11e-152(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-23myb domain protein 15