PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30226.m001997
Common NameLOC8289198, RCOM_1771650
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 641aa    MW: 72419.8 Da    PI: 9.8704
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30226.m001997genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.6e-112154236
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                      rW t+E++ll++avk++G ++W++++ +++ +Rt
    30226.m001997 21 ERWGTWEELLLACAVKRHGFKNWDSVSMELQ-TRT 54
                     59*****************************.**9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.1E-51976IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-52075IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-42175IPR009057Homeodomain-like
PfamPF002491.5E-92155IPR001005SANT/Myb domain
CDDcd001676.16E-62273No hitNo description
SMARTSM002975.0E-14278383IPR001487Bromodomain
SuperFamilySSF473702.22E-16283387IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.4E-15285387IPR001487Bromodomain
PfamPF004393.5E-10288363IPR001487Bromodomain
CDDcd043691.30E-6288378No hitNo description
PROSITE profilePS5001411.022293364IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MEKEKQATRT ETQNREEEAE ERWGTWEELL LACAVKRHGF KNWDSVSMEL QTRTSLPHFL  60
TSARNCQQKY HDLHRRFTTS KNDFVQPQEE EDENNSNKVA SIHIPWLEEL RKLRVAELKQ  120
EVHRYDISIH SLQLKVKRLE EEREKGNQND DVTIPDLEQP QSDKKEEEEE EEEESEQKES  180
VSGDESDREN RSVNESNSTG SEGEKKGVAK PSVQEDEEAP VLSGSSSKSV ESHELADSVT  240
QLSSEVQSSA SLGGKRKRKG RKRREEIAAG GDGIKGRMMV KSEPLIALLE SIRAHNHASL  300
FEGPLKTQET DVYKNMIRQH LDLETIQTKL EQGSYSSSNL LCYRDLLLLF NNAIVFFSKS  360
SNESTAAYEL RSVVSNQMKK EIQKPEFTAV PQEIPPQPKS ELQKSDSLLA KHKASAPIVV  420
CRKRSSLTAK PSPSSFGQKT EQQQPQQQQQ QINDNEPPSD SKPPVVEQSL LKIEAKEKPV  480
TGTRSSRRSN KNLAKGTTTP SKKQNASPTT KVDTVDRPET PKTEKKKTEV LALDKKRSAA  540
DFLKRIKKNS PVETAKKNTR GSVNGGMEWK KDNNTGKGEK GKERVLRKNG DEKQVEESSP  600
SKRNVGRPSK KSVEVSKVSG KRGRENVGKE AAKRPKKRSR R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257264RKGRKRRE
2632640KRPKKRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap30226.m001997
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512156.10.0histone H3.v1
TrEMBLB9REI70.0B9REI7_RICCO; DNA binding protein, putative
STRINGXP_002512156.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-102DNA-binding bromodomain-containing protein