PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 312456
Common NameARALYDRAFT_312456
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 495aa    MW: 54006 Da    PI: 9.0239
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
312456genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000116686323
             ETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
             C+ C+k F r  nL+ H r H
   312456 66 CEVCNKGFQREQNLQLHRRGH 86
             *******************88 PP
2zf-C2H212.80.00036140162123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              +kC +C+k++  +s+ k H +t+
   312456 140 WKCDKCSKRYAVQSDWKAHSKTC 162
              58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0256486IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.52E-76486No hitNo description
PROSITE profilePS5015710.976486IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-56486IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355140105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-5128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.52E-7135160No hitNo description
SMARTSM00355140140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MSSSYNTIAS SSAQTFLLSG AASGARPNNF NREEAARTMI QQPNSSVTPP PKKRRNQPGN  60
PSKFLCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKSNKEV RRKVYLCPEA SCVHHDPARA  120
LGDLTGIKKH YYRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTKEYRCD CGTIFSSERE  180
KDSEGERKIK DAKFGHIGWF HCLINEYCGQ RDIVGVVDEH FTFLGRDSYI THRAFCDALI  240
QESARNPTVS FTAMAPAAGG GTRNGFYGGA SAALSHNHFG NNSNSGFTPL AAGYNLNRSS  300
SDKFEDFVPQ STNPNPGPTN FLMQCSPNQG LLAQNNQSLM NQHGLISLGD NTNHNLFNIG  360
YFQDTKNSDQ IGVPSLFTNG ADNNDPSAFL RGLTSSSSPT VVVNDFGDSD NGNLQGLMNS  420
LAATTDQQGR PTSLLDLHFG NNLSMGGADR LTLDFLGVNG GIVSTVNGRG GRSGGPPLDA  480
EMKFSHPTHP FGKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-24136250369Zinc finger protein JACKDAW
5b3h_F3e-24136250369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAPTransfer from AT1G14580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap312456
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0910410.0AY091041.1 Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds.
GenBankAY1337660.0AY133766.1 Arabidopsis thaliana clone U18944 putative zinc finger protein (At1g14580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869197.10.0protein indeterminate-domain 6, chloroplastic isoform X1
RefseqXP_020869198.10.0protein indeterminate-domain 6, chloroplastic isoform X2
RefseqXP_020869199.10.0protein indeterminate-domain 6, chloroplastic isoform X2
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLD7KBM30.0D7KBM3_ARALL; T5E21.8
STRINGfgenesh1_pm.C_scaffold_10012360.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]