PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 313311
Common NameARALYDRAFT_313311
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Dof
Protein Properties Length: 399aa    MW: 44686.6 Da    PI: 7.9286
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
313311genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1183.5e-37131190261
  zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
             ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG++r vPvG+grrknk +
  313311 131 PDKILPCPRCNSADTKFCYYNNYNVNQPRHFCRKCQRYWTAGGSMRTVPVGSGRRKNKGW 190
             7899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-31128188IPR003851Zinc finger, Dof-type
PfamPF027011.1E-30133188IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.155135189IPR003851Zinc finger, Dof-type
PROSITE patternPS013610137173IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MWLSHLFMSL SQLTCNFSIF SVFMACGSII GMSQVRDTPV KLFGWTITPV SHDPHSSSST  60
VLPDSSSSSS SSSPSLRPHM MNNQSATDNT SLKMSSNLNN ESKETSENSD DQHSEITTIT  120
SEEKTTELKK PDKILPCPRC NSADTKFCYY NNYNVNQPRH FCRKCQRYWT AGGSMRTVPV  180
GSGRRKNKGW VSSDQYMHIT SEDTDNYNSS STKILSFESS DSLLTENTKH QSSNVKKNGD  240
SVSQELNNFQ GFLPPQGYPV SPPWPCQYPP NPSFYHMPVY WGCAVPVWST LGTSTCLGKR  300
TRDEAEASHE SVKESKNAFV RTSLVLESRS IKNETSTATN NHVWYPVPMT REKTEQFSFF  360
SNGAETKSNN QRFVPETYLN LQANPAAMAR SMNFRESI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap313311
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065350.0AC006535.7 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866527.10.0dof zinc finger protein DOF1.3
SwissprotQ9LQX40.0DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLD7KQL60.0D7KQL6_ARALL; Dof-type zinc finger domain-containing protein
STRINGfgenesh1_pm.C_scaffold_10020910.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140821624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.10.0Dof family protein