PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

31349

Organism

Ostreococcus lucimarinus

Taxonomic ID

242159

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C3H

Protein Properties

Length: 706aa MW: 77406.1 Da PI: 9.0383

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
31349	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.5e-06	672	694	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++f r G C+ Gd CkF Hg+ 31349 672 VYCKHFDR-GNCWNGDACKFRHGR 694 57****.***********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.5E-5	668	694	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.774	668	695	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-5	670	693	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.9E-5	673	694	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MPAAESSDDE DDARADGARA TPTAKKRRAA AAAAAEEDDE DAAFANTLSR GLQSGHDARV 60 TTRVADREGQ QRFQDALHAV ANAFRACKRS GRTRDAEVAN AVELVRDAHD RLPSEMRIPA 120 ESPYEKLMRY TRHLTQRVGV RDDMSKNLPE STVRAIEDAA NALAESVPEA MNKSDGRNAI 180 TSLNALKLTL DRTRGAASSK AGSAWDDKAT RCKDVAQALL NVTEADTKVT MHSQYLGGPM 240 HALDAFASDQ LTEMSHDEKT TDAQYLWRVL RAFSQALFEQ HSVDSFIAKA IPSSLQKEAR 300 DFFKNRTSKD CALDTLVKRV KLFPALVIAA YGSMSSDKVT KIREVLSNPV EVALPTSIQF 360 MKIHGHALAP SANDVLFVQR ATTEQIARLN RAGIPFHASI TRQEANAALE GAEQHIKWEE 420 DNAPQSHALL QSLSSSPIPS LPVPPASSVF ERLGEKVQVK KTKTQLKAET TKDFKHSKRC 480 KICDHTVHAP TPTSLANVWA QHQTSKMHKA AVQAKKDAKN TPQQAPHPLA SLAPVERAYA 540 QMVDVPPPPT SMAKGENQGD VRIMKAQITQ ATEVPPPPPE GCARALGFQY KNAGVSHPLE 600 KLWVPGEEGE VVSRSSTETH VGAMNNGARY GDVVGRQIQQ RLQNVQHQQQ SLKRKRIELF 660 ARKPDPPRRG PVYCKHFDRG NCWNGDACKF RHGRVPDSPC DSYDG*

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MPAAESSDDE DDARADGARA TPTAKKRRAA AAAAAEEDDE DAAFANTLSR GLQSGHDARV  60
TTRVADREGQ QRFQDALHAV ANAFRACKRS GRTRDAEVAN AVELVRDAHD RLPSEMRIPA  120
ESPYEKLMRY TRHLTQRVGV RDDMSKNLPE STVRAIEDAA NALAESVPEA MNKSDGRNAI  180
TSLNALKLTL DRTRGAASSK AGSAWDDKAT RCKDVAQALL NVTEADTKVT MHSQYLGGPM  240
HALDAFASDQ LTEMSHDEKT TDAQYLWRVL RAFSQALFEQ HSVDSFIAKA IPSSLQKEAR  300
DFFKNRTSKD CALDTLVKRV KLFPALVIAA YGSMSSDKVT KIREVLSNPV EVALPTSIQF  360
MKIHGHALAP SANDVLFVQR ATTEQIARLN RAGIPFHASI TRQEANAALE GAEQHIKWEE  420
DNAPQSHALL QSLSSSPIPS LPVPPASSVF ERLGEKVQVK KTKTQLKAET TKDFKHSKRC  480
KICDHTVHAP TPTSLANVWA QHQTSKMHKA AVQAKKDAKN TPQQAPHPLA SLAPVERAYA  540
QMVDVPPPPT SMAKGENQGD VRIMKAQITQ ATEVPPPPPE GCARALGFQY KNAGVSHPLE  600
KLWVPGEEGE VVSRSSTETH VGAMNNGARY GDVVGRQIQQ RLQNVQHQQQ SLKRKRIELF  660
ARKPDPPRRG PVYCKHFDRG NCWNGDACKF RHGRVPDSPC DSYDG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000584	0.0	CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001417585.1	0.0	predicted protein
TrEMBL	A4RWI6	0.0	A4RWI6_OSTLU; Uncharacterized protein
STRING	ABO95878	0.0	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP13130	2	2

Link Out ? help Back to Top
Phytozome	31349