PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 314222
Common NameARALYDRAFT_314222
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21274.8 Da    PI: 10.6692
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
314222genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.42.1e-14957149
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
            krie+ ++r+ tf +Rr+ i+KKA  L  L ++evav+++s+t+  y+y
  314222  9 KRIEDITKRKATFLRRRKSIFKKADALAKLWNVEVAVLVISPTNIPYTY 57
            79******************************************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.367161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-21288IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-11323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-161057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRSKIEIKR IEDITKRKAT FLRRRKSIFK KADALAKLWN VEVAVLVISP TNIPYTYGNP  60
CFNDVVERIQ NPSASSKLDS LMKELEQIKE LEEVLRKRQQ KNREKSNMKG IVDLKLEDLV  120
AFKGKLEAHQ AGLKRKHVEM EDLSSPSMLS KNTKKKKTRT ESSSGQSREM YELRPRIPRN  180
YLE*
Cis-element ? help Back to Top
SourceLink
PlantRegMap314222
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412411e-169AY141241.1 Arabidopsis thaliana MADS-box protein AGL102 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891382.21e-122LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL29
TrEMBLD7KAX61e-130D7KAX6_ARALL; MADS-box protein
STRINGfgenesh1_pm.C_scaffold_10030021e-131(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16164513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.18e-88AGAMOUS-like 102