PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

314370

Common Name

ARALYDRAFT_314370

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 169aa MW: 19557.6 Da PI: 9.8114

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
314370	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.9	2.1e-14	38	120	9	98
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + k++++ +p +f+ ++g k + +tle++ g + ++++ r+ +++++++kGW+eF++a+ L +g f+ F+++g+s+f +v +f+ 314370 38 KTIKEKMMKVPARFV-RFGPK--LTDNVTLETPVGFKCSIRI--RRIGDEVWFEKGWSEFAEAHFLSDGHFLFFHYKGDSCF--RVVIFD 120 56678899*****.66633..5568***********..************************************..888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.35E-19	25	122	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.8E-18	26	122	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.84E-14	29	120	No hit	No description
PROSITE profile	PS50863	10.334	30	122	IPR003340	B3 DNA binding domain
SMART	SM01019	4.0E-11	31	122	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-12	38	120	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MHTNRRSSGR ITSAATQRRL KPEPEPTVKK FIKVILLKTI KEKMMKVPAR FVRFGPKLTD 60 NVTLETPVGF KCSIRIRRIG DEVWFEKGWS EFAEAHFLSD GHFLFFHYKG DSCFRVVIFD 120 VSASEIDYPL DKVYVIESDA DDDDKEEGLP DLKLKKKPRV NIKSYNTW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	158	KLKKKPR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	314370

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007504	1e-106	AC007504.3 Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence.
GenBank	CP002684	1e-106	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020866754.1	1e-105	B3 domain-containing protein At1g49475
Swissprot	Q9XIB4	7e-86	Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBL	D7KEX5	1e-120	D7KEX5_ARALL; DNA binding protein
STRING	fgenesh1_pm.C_scaffold_1003150	1e-121	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	3e-88	B3 family protein

Link Out ? help Back to Top
Phytozome	314370
Entrez Gene	9327575

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]