PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 31465
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 581aa    MW: 65300.8 Da    PI: 8.3634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
31465genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-06162182526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
              +C+f+++ G C +G +C+F H+
    31465 162 PCQFWRA-GKCERGVNCRFYHD 182
              7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5137511.6191448IPR002885Pentatricopeptide repeat
PfamPF130413.6E-101560IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.3E-61650IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.444983IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0025185IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.05284118IPR002885Pentatricopeptide repeat
PfamPF015350.009388114IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-589120IPR002885Pentatricopeptide repeat
PROSITE profilePS5010314.859157184IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-4159183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5160182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4162183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5162522.994309579IPR003358tRNA (guanine-N-7) methyltransferase, Trmb type
PfamPF023909.8E-15372454IPR003358tRNA (guanine-N-7) methyltransferase, Trmb type
SuperFamilySSF533352.91E-6372516IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006400Biological ProcesstRNA modification
GO:0008176Molecular FunctiontRNA (guanine-N7-)-methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MFVNLVSREG LVPSPYTYAS LLNAYVNTGT MDGAEALMER MRDVGCAPNV VAYTTMLKGY  60
MLVANVDAAW RTLNGIMHNR MSPDSRAVNT YIRVCVRCGN LQMARRAFDR MRDWDVVPDA  120
TTHKLIGRLL AQGLKRDELK ALIKRTVKGE HLRWTKDPSS GPCQFWRAGK CERGVNCRFY  180
HDDSIVQSDA RVREIESNDT LASMYVNHAH ASAISGDVKQ SKKSLRKAAE YLTENVTAEA  240
LTVGGLKDKD ERAELFRQTN RDELKLEMRR IEDFVERLMS GKQQPPKLDE HLSRSLIFSS  300
RLFQEVPERG AKMSSEEVDA LRDNLYAALK DTMGLNDDSD GSVKRAIRKV IAKDGTIRFD  360
RMFGRSKKEK RELNVEVAAG NGDWAVAQAK TDASADWISL ELRHDRVYSI FSRAVCSGAS  420
NFAAMGGDAA YIMRRYVASE SVSHVFVNFP EPPHHSGDAA ADNSLALLNE EFFRDIHACL  480
RRAYTSTDAP GGLTIFSDNH RYMQALARTL AELDIFTARD DVDLASGAPA NQYETIRGVR  540
LYQGVPGPSA GHRVYEQSYF DRFWENGQHV DRYFISLVRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9h_A2e-14832844379pentatricopeptide repeat protein dPPR-U8G2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005850.0CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417638.10.0predicted protein
TrEMBLA4RWU90.0A4RWU9_OSTLU; Uncharacterized protein
STRINGABO959310.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP841622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.21e-08pentatricopeptide (PPR) repeat-containing protein