PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 315617
Common NameARALYDRAFT_315617
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 147aa    MW: 15969.5 Da    PI: 4.8894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
315617genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-1776127156
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
             ++ykGVr ++ +g+W+AeI+dps+   + r +lg+f tae Aa  +++a+++l ge
  315617  76 KKYKGVRKKP-SGKWAAEIWDPSS---KSRKWLGTFLTAETAASSYDEAARSLSGE 127
             59*****999.7*********854...5************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.71E-2376127No hitNo description
SuperFamilySSF541716.47E-1577128IPR016177DNA-binding domain
PfamPF008476.2E-977126IPR001471AP2/ERF domain
SMARTSM003801.2E-2177134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-2377128IPR001471AP2/ERF domain
PROSITE profilePS5103218.50577143IPR001471AP2/ERF domain
PRINTSPR003671.1E-67889IPR001471AP2/ERF domain
PRINTSPR003671.1E-6100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDHSENVPSN DQHENVTLVA PSEEHEIMVS ALQQVISNSR ADASSSNLIA SEGLPPPDAG  60
PCCTLQRPHR EIEKEKKYKG VRKKPSGKWA AEIWDPSSKS RKWLGTFLTA ETAASSYDEA  120
ARSLSGEHQQ DVAKRTEEEL NGGGDD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap315617
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266403e-60AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBankAY5608593e-60AY560859.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g67000) mRNA, complete cds.
GenBankBT0247023e-60BT024702.1 Arabidopsis thaliana At5g67000 mRNA, complete cds.
GenBankCP0026883e-60CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ1457753e-60DQ145775.1 Arabidopsis thaliana AP2/EREBP transcription factor (At5g67000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865580.12e-81LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF122
SwissprotQ38Q408e-60EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLD7KT011e-104D7KT01_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_20006501e-104(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.13e-52ERF family protein