PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 315745
Common NameARALYDRAFT_315745
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CAMTA
Protein Properties Length: 1032aa    MW: 115226 Da    PI: 5.656
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
315745genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.62.4e-53491652117
    CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLe 103
             ++e ++rwlk+ e++ iL+n+e+ +lt+++++rp+sgsl+L+n++++++frkDG++w++k+dg+++ E+he+LKvg+ e+l+cyYah+e++ptf+rr+yw+L+
  315745  49 YQEaRSRWLKPPEVLFILQNHERLTLTNTAPQRPTSGSLFLFNKRVLKFFRKDGHQWRRKRDGRAIAEAHERLKVGNAEALNCYYAHGEQDPTFRRRIYWMLD 151
             56779************************************************************************************************** PP

    CG-1 104 eelekivlvhylev 117
              e+e+ivlvhy++v
  315745 152 PEYEHIVLVHYRDV 165
             ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.30845171IPR005559CG-1 DNA-binding domain
SMARTSM010769.8E-8348166IPR005559CG-1 DNA-binding domain
PfamPF038591.9E-4651165IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.8E-8461549IPR013783Immunoglobulin-like fold
CDDcd001029.09E-7462547No hitNo description
PfamPF018331.5E-8462545IPR002909IPT domain
SuperFamilySSF812966.16E-18462546IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.202.6E-14660756IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.8E-15661756IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.433662754IPR020683Ankyrin repeat-containing domain
CDDcd002042.94E-13667754No hitNo description
PfamPF127961.0E-7683755IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.766695727IPR002110Ankyrin repeat
SMARTSM002480.0021695724IPR002110Ankyrin repeat
SMARTSM002481900734763IPR002110Ankyrin repeat
SMARTSM0001559812834IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876813841IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.13E-8813922IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.2869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.352870899IPR000048IQ motif, EF-hand binding site
PfamPF006120.015873890IPR000048IQ motif, EF-hand binding site
SMARTSM000156.1E-5892914IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.883893917IPR000048IQ motif, EF-hand binding site
PfamPF006122.6E-4895914IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1032 aa     Download sequence    Send to blast
MNNNTIRSVA EDHYPSCDIA TIFVAICRNP PVLFLEILHF VKYEISTLYQ EARSRWLKPP  60
EVLFILQNHE RLTLTNTAPQ RPTSGSLFLF NKRVLKFFRK DGHQWRRKRD GRAIAEAHER  120
LKVGNAEALN CYYAHGEQDP TFRRRIYWML DPEYEHIVLV HYRDVSDREE GQQAGGQVYQ  180
FAPIPSTLFL SPNSIGTQNV SYNHYIGDSS DIHQQHSSTS PGIAEVNSNL EGSGSSSEFE  240
QALKMLKEQL SIGDEQVNSV DPLNIQPESL DSLQFLEYSN DRDHLVQPTT IYQRPENNKL  300
ERCYGGNFGA QYNAKNDSNK LERCYGGYVG AEYHSSNLML VKNDSGGTGG SGDQGSESWK  360
DVLEACEASI PLNSEGSTPS SAKGLLAGLQ EDTNWSYNNQ VDQSTLLLPQ DLGSFEVPVS  420
YSALGALENN DDYCRMMDNE GKIGLPFEEE MRLAGAHKKK FTIHDISPEW GYSNETTKVI  480
IVGSFLCDPT ESTWSCMFGN AQVPFEIIKE GVIRCRAPPC GPGKVNLCIT SGDGLSCSEI  540
REFEYRDKPD TCCPKCSERQ TSDMSTSPDE LSILVMFVQT LLSDRPSERK SNLESGNDKL  600
LKILKADDDQ WRHVIGAVLD GSASSTKTVD WLLQELLKDK LDTWLSSRSC DEDYTTCSLS  660
KQEQGIIHMV AGLGFEWALY PILGHGVSVD FRDINGWSAL HWAARFGSEK MVAALIASGA  720
SAGAVTDPSR QDPNGKTAAS IAASNGHKGL AGYLSEVALT NHLSSLTLEE TESSKDTAQV  780
QTEITLNSIS EQSPSGNEDQ VSLKDTLAAV RNAAQAAARI QAAFRAHSFR KRKQREAAMA  840
ACLQEYGIYC EDIEGISAMS KLTFGKVRNY HLAALSIQKK YRGYKGRKEF LELRQKVVKI  900
QAHVRGYQIR KNYKVICWAV GIIDKVVLRW RRKGVGLRGF RQDVESTEDS EDEDILKVFR  960
KQKVDGAVNE AFSRVLSMAN SPEARQQYHR VLKRYCQTKA ELGKTETLIG DDDDGLFDIA  1020
DMEYDTLFTL P*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap315745
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100260.0AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890718.10.0calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLD7KV170.0D7KV17_ARALL; Calmodulin binding protein
STRINGfgenesh1_pm.C_scaffold_20007780.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]