PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 317287
Common NameARALYDRAFT_317287
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 206aa    MW: 23705.7 Da    PI: 10.5027
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
317287genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551e-172069150
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
            k++en+  r +tfskR++gi+KK +EL  +Cd+eva +ifs+  k y+++
  317287 20 KKVENYGDRMITFSKRKAGIFKKMNELVAMCDVEVAFLIFSQAKKPYTFA 69
            6789********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.19E-231287IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.2121272IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-211271IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-161434IPR002100Transcription factor, MADS-box
PfamPF003191.0E-192168IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-163449IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-164970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSTKQAKGRK TKGKQKIEMK KVENYGDRMI TFSKRKAGIF KKMNELVAMC DVEVAFLIFS  60
QAKKPYTFAH PSMQEVADRL KNPSRQEPLA KDDTGPLVEA YKKRRFHDLI KKMEALEEEL  120
TMDLEKLKLL KESRNEKKLD KMWWNFPSKG LSVEELKQRH QAIVELRDNL CDNMALLRLG  180
KDGGSSSVRV GRRLSGGVRL FDREA*
Cis-element ? help Back to Top
SourceLink
PlantRegMap317287
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0168290.0AC016829.7 Arabidopsis thaliana chromosome III BAC T6K12 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankDQ0565860.0DQ056586.1 Arabidopsis thaliana MADS-box family protein (At3g04100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882329.21e-150MADS-box transcription factor 23
TrEMBLD7L2161e-148D7L216_ARALL; MADS-box family protein
STRINGfgenesh1_pm.C_scaffold_30003031e-149(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-121AGAMOUS-like 57