PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 317350
Common NameARALYDRAFT_317350
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CPP
Protein Properties Length: 612aa    MW: 67178.8 Da    PI: 5.9262
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
317350genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.21e-15429467240
     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
             ++k+C+Ckks+Clk+YCeCfaag +C e C+C++C+Nk 
  317350 429 SCKRCKCKKSQCLKLYCECFAAGLYCVEPCSCQNCFNKP 467
             589**********************************96 PP
2TCR46.57.4e-15515553240
     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
             +++gCnC+ks ClkkYCeC   g+ Cs++C+C +CkN  
  317350 515 HTRGCNCRKSGCLKKYCECNLMGVRCSSSCRCIGCKNVF 553
             889**********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.9E-17428469IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.198429554IPR005172CRC domain
PfamPF036385.2E-11431466IPR005172CRC domain
SMARTSM011149.7E-15514555IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.4E-11517551IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MDTPDKNRIS AVSLRNFEYS PVFQYINELS PIEPVKPAPP ENILHSLAFT SPSSLFSSPQ  60
LTSYRDSRFS IKRHRSLDLS SPPLVLIGET VKTSPDAQEA VKISGLCEEQ LQCRPAQLAN  120
VSETKPFKEQ ISLAIELANS LKHAMDGCDT QMVSCDEVPM DAENELGGCG GSRELSDELC  180
RHPIDPLDFD DDSDGVHQTE EMEAESGFGP EVIMFDVAGI QNNEQQIPRT ADPRFYSLAS  240
VPQQFSIRCN NSANVLEPGG SCSVQVAAGA PDITLSSSSK VAAIVSTAEA EDKEDKDLQP  300
SRKVTFHGIP LRDSTNDLPL DSTSKPPSPR KFLPIPRTIG LHLNGYVNPS VSSGRKKKKF  360
KDGRVFPPTT FHHNNEDEFS TPVSTKRDLV FSGVKIMEAT ERSMEGECID QHMAIENRQL  420
SQGLDKLGSC KRCKCKKSQC LKLYCECFAA GLYCVEPCSC QNCFNKPIHE DLVMKSREVI  480
EARNPLAFAP KVVSTSDTAI DLWVENSKTP ASARHTRGCN CRKSGCLKKY CECNLMGVRC  540
SSSCRCIGCK NVFGHTNEKC AGESDAVTIN DEAKHCGDSR QNEETSNSER RNRLLLPGSV  600
AFRSLTSLSE L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1843155212121Protein lin-54 homolog
5fd3_B5e-1843155212121Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap317350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0039260.0BT003926.1 Arabidopsis thaliana clone RAFL15-25-I04 (R20696) unknown protein (At3g04850) mRNA, complete cds.
GenBankBT0050100.0BT005010.1 Arabidopsis thaliana clone U20696 unknown protein (At3g04850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886522.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 4
SwissprotQ84JZ80.0TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBLD7L2Z30.0D7L2Z3_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_30003660.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148401620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.10.0Tesmin/TSO1-like CXC domain-containing protein