PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 317484
Common NameARALYDRAFT_317484
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 176aa    MW: 19524.4 Da    PI: 3.9635
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
317484genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-171698896
            -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
            s+v+++++  +p+ +  eh ++   +kt +l+ + gr W+v +    k++++++++GW +Fv +n+Lk+g+f++F +dg+++    v++
  317484 16 SNVSSNSLKLIPRVYY-EH-LPRWLPKTAILTGTGGRFWKVAM--MSKREQVYFEQGWGNFVADNDLKDGEFLTFVFDGHKSY--EVSI 98
            7888999999999999.55.3567999****************..999999*************************9987655..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.45E-198104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-16899No hitNo description
PROSITE profilePS5086313.7049102IPR003340B3 DNA binding domain
SMARTSM010191.3E-1410102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-1713101IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-141598IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MASGDVLPRF YTVFLSNVSS NSLKLIPRVY YEHLPRWLPK TAILTGTGGR FWKVAMMSKR  60
EQVYFEQGWG NFVADNDLKD GEFLTFVFDG HKSYEVSIYG RGECKETRAV IQVEEISDET  120
ESDNDSLGSL VDVTPMPVEE NSDDTEGDND SGDSVVDVTP MPVEEISDAS ENDSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-17910410104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap317484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936040.0AB493604.1 Arabidopsis thaliana At3g06220 mRNA for hypothetical protein, partial cds, clone: RAAt3g06220.
GenBankDQ4466400.0DQ446640.1 Arabidopsis thaliana clone pENTR221-At3g06220 transcriptional factor B3 family protein (At3g06220) mRNA, complete cds.
GenBankDQ6530690.0DQ653069.1 Arabidopsis thaliana clone 0000017013_0000011937 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888346.11e-124B3 domain-containing protein At3g06220
SwissprotQ1PES71e-109Y3622_ARATH; B3 domain-containing protein At3g06220
TrEMBLD7L4T41e-125D7L4T4_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_30005001e-126(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-102B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]