PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 317994
Common NameARALYDRAFT_317994
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 246aa    MW: 25798.9 Da    PI: 9.9432
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
317994genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.5e-073861225
             -S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
             k ++C  f+ t  C++G++C+F H
   317994 38 KSKPCTKFFSTSGCPFGENCHFLH 61
             7789******************** PP
2zf-CCCH35.22.2e-11212237127
              --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
              +kt++C ++++ G C +GdrC+FaHg+
   317994 212 FKTKICERYSK-GNCTFGDRCHFAHGE 237
              69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843664IPR000571Zinc finger, CCCH-type
SMARTSM003560.213663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-63763IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-53861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-83861IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.92E-15102183IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.1E-16112181IPR004088K Homology domain, type 1
SMARTSM003221.8E-11112182IPR004087K Homology domain
PROSITE profilePS5008414.55113177IPR004088K Homology domain, type 1
PfamPF000134.7E-12115179IPR004088K Homology domain, type 1
CDDcd001052.64E-13115177No hitNo description
Gene3DG3DSA:4.10.1000.101.8E-15206241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-8211241IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.727211238IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7211237IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8212237IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDTRKRGRPE VGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL  60
HYVPGGYNAV AQMTNMGPPM PQVSRNMQGS GNGGRFSGRG ESGPGHVSSF GASATAKISV  120
DASLAGAIIG KGGVSSKQIC RQTGAKLSIQ DHERDPNLKN IELEGTFEQI NEASAMVREL  180
IGRLNSAAKK PPGGLGGGGM GSEGKPHPGS NFKTKICERY SKGNCTFGDR CHFAHGEAEL  240
RRSIA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap317994
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273730.0AK227373.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-J23.
GenBankAY0857460.0AY085746.1 Arabidopsis thaliana clone 17632 mRNA, complete sequence.
GenBankBT0250320.0BT025032.1 Arabidopsis thaliana At3g12130 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884884.11e-180zinc finger CCCH domain-containing protein 36 isoform X1
SwissprotQ9C7C31e-157C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLD7KZP61e-178D7KZP6_ARALL; KH domain-containing protein
STRINGfgenesh1_pm.C_scaffold_30010101e-179(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-137C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]