PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 318458
Common NameARALYDRAFT_318458
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CAMTA
Protein Properties Length: 858aa    MW: 97467.1 Da    PI: 7.3919
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
318458genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1159.94.7e-50291462118
    CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLe 103
             l+e k+rwl+++ei+aiL+n + +++  ++ + p++g++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg  e +++yYah+e+n+tf rrcywlL+
  318458  29 LEEaKSRWLRPNEIHAILANPKYFTINVKPVNLPNTGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGDEERIHVYYAHGEDNTTFVRRCYWLLD 131
             55669************************************************************************************************** PP

    CG-1 104 eelekivlvhylevk 118
             +++e+ivlvhy++++
  318458 132 KARENIVLVHYRDTQ 146
             ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.92425151IPR005559CG-1 DNA-binding domain
SMARTSM010761.6E-7828146IPR005559CG-1 DNA-binding domain
PfamPF038598.9E-4431144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.8E-16319403IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.109.4E-4319393IPR013783Immunoglobulin-like fold
PfamPF018336.2E-5320401IPR002909IPT domain
PfamPF127963.9E-7506583IPR020683Ankyrin repeat-containing domain
CDDcd002041.41E-14511613No hitNo description
SuperFamilySSF484032.8E-16512620IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.2E-16514616IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.831521586IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.808554586IPR002110Ankyrin repeat
SMARTSM002484.5E-6554583IPR002110Ankyrin repeat
PfamPF006120.22703719IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.144703727IPR000048IQ motif, EF-hand binding site
SMARTSM00015100718740IPR000048IQ motif, EF-hand binding site
SMARTSM000150.022741763IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.274742766IPR000048IQ motif, EF-hand binding site
PfamPF006120.015743763IPR000048IQ motif, EF-hand binding site
SMARTSM0001516816838IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876817846IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MDGDGSGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILANPK YFTINVKPVN  60
LPNTGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH LKVGDEERIH VYYAHGEDNT  120
TFVRRCYWLL DKARENIVLV HYRDTQEAGT TSGDSNSSPI SVSDQAFPNL VTAEDIDFSI  180
ENSRYLASNN DTVVRNHDIS LHDINTLDWD ELLVPTDLNN QSAPTVDDLS YFTDSLQNAA  240
NGTAEHVNAT VADGSLDALL NNGPQSRESF GRWMNSFISE SNGSLEDPSF EPMVTPKQDP  300
LAPQAVFHSH SNIPEQVFNI TDVSPSWAYS SEKTKILVTG FLHDSYQHHA NLYCVCGDFC  360
VPAEYLQAGV YRCIIPPHSP GMVNLYLSAD GHKPISQCFR FEHRSVPVLD KTVPEENQES  420
KWEEFEFQVR LSHLLFTSSN KLNVLSSKIP PSNLRDAKKL ASKTNHLLNS WAYLIKSIQG  480
NKVSFDQAKD HLFELTLKNR LKEWLMEKVL EGRNTLDYDS KGLGVIHLFA ILGYTWSVQL  540
FSLSGLSLNF RDKQGWTALH WAAYYGREKM VAALLSAGAR PNLVTDSTKD NLGGCMAADL  600
AQQNGYDGLA AYLAEKCLIA QFRDMIIAGN ISGDLEACKA EMLNQGTLPE DEQSLKDALA  660
AYRTAAEAAA RIQGAFREKA LKAARSSVIQ FANKEEEAKS IIAAMKIQNA FRKYDTRRKI  720
EAAYRIQCRF QTWKIRREYL NMRRQAIRIQ AAFRGLQARR QYKKILWSVG VLEKAVLRWR  780
QKRKGFRGLQ VAAEEDSSGE AQEDFYKTSK RQAEERLERC VVRVQAMFRS KKAQEDYRRM  840
KLTHEEAQLE YDCLEDI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap318458
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100270.0AY510027.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883035.10.0calmodulin-binding transcription activator 6 isoform X1
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLD7L6930.0D7L693_ARALL; Calmodulin-binding protein
STRINGfgenesh1_pm.C_scaffold_30014740.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]