PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

319991

Common Name

ARALYDRAFT_319991

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

SRS

Protein Properties

Length: 177aa MW: 20160.9 Da PI: 9.1822

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
319991	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	93.4	4.8e-29	6	61	5	60
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaas 60 + +C+dCGnqakk+C ++RCRtCCks++f+C+th+kstWvpa++r ++++q +++ 319991 6 GRRCEDCGNQAKKECLYMRCRTCCKSKAFHCQTHIKSTWVPAYRRPHHKHQSQSQP 61 569******************************************99977766543 PP
2	DUF702	86	8.8e-27	60	128	85	154
DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + st+ ++ + ++ ++P+e+ss a frcv+vss+ddg+e++aYqt+v+igGhvf+GiL+dqGlee 319991 60 QPPSTSNPKR-VQIRTTLGHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGILHDQGLEE 128 3333333333.344556667***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.0E-47	6	127	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.5E-28	9	50	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.4E-30	78	126	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MMMIMGRRCE DCGNQAKKEC LYMRCRTCCK SKAFHCQTHI KSTWVPAYRR PHHKHQSQSQ 60 PPSTSNPKRV QIRTTLGHFP AELSSLADFR CVKVSSIDDG KEQYAYQTTV NIGGHVFRGI 120 LHDQGLEEGM IDHHYNKNSN NHQESLHPST SSCPLMTTSP FTDFMSRAQF SSVLRR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	319991

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY163777	1e-178	AY163777.1 Arabidopsis thaliana hypothetical protein (F3K23.16) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020885613.1	1e-128	protein SHI RELATED SEQUENCE 3
Swissprot	Q9SJT8	1e-111	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	D7LBD1	1e-131	D7LBD1_ARALL; Uncharacterized protein
STRING	fgenesh1_pm.C_scaffold_4000048	1e-132	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	1e-105	SHI-related sequence3

Link Out ? help Back to Top
Phytozome	319991
Entrez Gene	9314619