PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 320100
Common NameARALYDRAFT_320100
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26289.8 Da    PI: 9.0868
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
320100genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF849e-271059251
            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
            +i++++ rqvtfskRr+g++KKA+EL +LCdaev++iifsst+kly+++s
  320100 10 KIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSSTDKLYDFAS 59
            79**********************************************86 PP
2K-box78.22.1e-2681171999
   K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
             + +++ + +q+e++ L++e+++Lq+++Rhl Ge+L+ Ls+keL++Le+qLe sl+ iR k++++l+++i+el +k   l++en ++++k++
  320100  81 NPASEVKFWQREAETLRQELHSLQENHRHLTGEQLNGLSVKELRNLESQLEMSLRGIRMKREHILTNEIKELTRKRSLLHHENLEISRKVQ 171
             567889*********************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.025161IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.71E-37278No hitNo description
SuperFamilySSF554559.29E-31291IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-253859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2484170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.61986176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSS TDKLYDFASS  60
SVKSTIERFN TTKMEQQQLL NPASEVKFWQ REAETLRQEL HSLQENHRHL TGEQLNGLSV  120
KELRNLESQL EMSLRGIRMK REHILTNEIK ELTRKRSLLH HENLEISRKV QRIHQENVEL  180
YKQVYATSNT NGLGHHELVD GANESLVEVR LQLSQPEQSH YETSSNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18169169MEF2C
5f28_B1e-18169169MEF2C
5f28_C1e-18169169MEF2C
5f28_D1e-18169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap320100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935580.0AB493558.1 Arabidopsis thaliana At2g22630 mRNA for hypothetical protein, partial cds, clone: RAAt2g22630.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878626.11e-165agamous-like MADS-box protein AGL17
SwissprotQ388401e-148AGL17_ARATH; Agamous-like MADS-box protein AGL17
TrEMBLD7LE251e-164D7LE25_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_40001571e-164(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.11e-151AGAMOUS-like 17
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]