PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 320274
Common NameARALYDRAFT_320274
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 681aa    MW: 76154.2 Da    PI: 5.7656
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
320274genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.3e-2231121598
             -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             ++++++ +++ l+lp +f++e+g++k++  ++ l  ++g +W  +l  ++++gr++l++GWk+FvkangLk+gD+ +Fkl + +++ +v+++++
  320274  31 FVTASSQQTDALRLPMQFTRENGINKPG--KIYLLGKDGSKWLANLLSENNRGRMTLGDGWKSFVKANGLKTGDTYTFKLFW-DDTIPVLSLCS 121
             56788888999************99776..8***************99********************************99.55558888887 PP
2B365.76.9e-21190279497
             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
              ++++d+l++grl+lp +f++e++++k++  ++tl  ++g +W   l    ++gr+ l+kGWk+F+kang+k+gD+++++ ++ +++++v+k++
  320274 190 LTITPDSLEHGRLRLPLQFMTENNMNKPG--EITLLGKDGAKWMASLL-LERRGRMSLGKGWKDFAKANGVKTGDSITLESIW-EDTTPVLKLI 279
             5689*******************999766..8***************5.55556789***********************999.8888999876 PP
3B348.51.6e-15582670597
             -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
             ++ +   k g+l lp +f++ +g++k++  ++tl  + g +W  +l    ++g++vl++GWk+F++ang+  g+++++++++ ++++ v+k++
  320274 582 TLAPEDVKDGNLHLPIQFMRINGINKPG--KITLLGRGGLKWFAYL--LSRDGTVVLGNGWKGFCEANGVMLGESFILEFISIEDTNHVFKFY 670
             44455556666********999999766..8***************..99999**************************99878887777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.10127123IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-2131123IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-2131122IPR003340B3 DNA binding domain
SMARTSM010198.8E-2831123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-2132123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-1942121No hitNo description
Gene3DG3DSA:2.40.330.106.9E-20180277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-22183279IPR015300DNA-binding pseudobarrel domain
CDDcd100178.51E-18186280No hitNo description
PROSITE profilePS5086314.494187282IPR003340B3 DNA binding domain
SMARTSM010191.9E-28187282IPR003340B3 DNA binding domain
PfamPF023623.0E-20189280IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-8490553IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-8490551IPR015300DNA-binding pseudobarrel domain
PfamPF023628.6E-8496551IPR003340B3 DNA binding domain
SMARTSM010190.0044496572IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-17571669IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-20572659IPR015300DNA-binding pseudobarrel domain
CDDcd100174.72E-13577670No hitNo description
PROSITE profilePS5086313.14578673IPR003340B3 DNA binding domain
PfamPF023627.9E-15578671IPR003340B3 DNA binding domain
SMARTSM010194.2E-21578673IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MMIQVSDHHD NNIEFQRQKN SSETEADYSC FVTASSQQTD ALRLPMQFTR ENGINKPGKI  60
YLLGKDGSKW LANLLSENNR GRMTLGDGWK SFVKANGLKT GDTYTFKLFW DDTIPVLSLC  120
SEEYNTDTRV GEECSKESLP TEPSSQEKVV KDDNNKHESN KDESSLWKRE DNHLRCIDST  180
SPSENRSLTL TITPDSLEHG RLRLPLQFMT ENNMNKPGEI TLLGKDGAKW MASLLLERRG  240
RMSLGKGWKD FAKANGVKTG DSITLESIWE DTTPVLKLIS IESSSGQFSK ESLSVEPSSG  300
NMTEKAEKNR EASRKYPPRS RESSSAIENQ FMALTPSCDI ISQVAHDLRI GEVIIFRHEG  360
DNMLQVSDLG PNCCGILDVP APSSNNDHDN IEHPSKKKVK KNNPETEADY LSDHSCSVAH  420
VTTSSLHANA LSLAVKESIT IEPSIDDNNK DESSKEENDI EEKSNNKNNI EESSSFEREK  480
NHRICIDSIS SSHNRFLTLT ITPDSLKHGR LRLPLQFMTE NSMNKPGEIT VLGKDGAKWL  540
VSLLLERRGR MSLDASSGHK TREAEKNRDS SSEIENRFLT LTLAPEDVKD GNLHLPIQFM  600
RINGINKPGK ITLLGRGGLK WFAYLLSRDG TVVLGNGWKG FCEANGVMLG ESFILEFISI  660
EDTNHVFKFY SSYGDQIDKC *
Cis-element ? help Back to Top
SourceLink
PlantRegMap320274
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069541e-173AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026851e-173CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883518.10.0B3 domain-containing protein REM-like 1, partial
SwissprotQ8S8E80.0REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLD7LIB50.0D7LIB5_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_40003310.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]