PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 320424
Common NameARALYDRAFT_320424
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 94aa    MW: 10989.9 Da    PI: 9.7603
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
320424genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.34e-181053245
            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
            rie+   r+  +skR++g++KKAeE+  LCd ev +i++s+t+k
  320424 10 RIESLKERSSKYSKRKQGLFKKAEEVALLCDCEVILIVVSPTDK 53
            89***************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.418161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-25160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-23279IPR002100Transcription factor, MADS-box
CDDcd002664.62E-23284No hitNo description
PRINTSPR004042.3E-14323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-171056IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MGRKKIKLNR IESLKERSSK YSKRKQGLFK KAEEVALLCD CEVILIVVSP TDKPTLFHTR  60
SKSFNKIYDR YCMLSLQERE ERCDLSDLYI IIT*
Cis-element ? help Back to Top
SourceLink
PlantRegMap320424
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884452.18e-52agamous-like MADS-box protein AGL66
TrEMBLD7LDF52e-60D7LDF5_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_40004814e-61(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.11e-51AGAMOUS-like 33