PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 321255
Common NameARALYDRAFT_321255
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 254aa    MW: 27833.7 Da    PI: 8.0673
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
321255genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.21.3e-13145170126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              +kt++C+ +  tG+C++G +C+FaHg
   321255 145 WKTRICNKWETTGYCPFGTNCHFAHG 170
              8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-1467104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-669102IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-47097IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4417098IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-18139174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-10141175IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-8144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216144172IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10145170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSHRRDSGSD AVHVRIANDP PPDNWFPNSG NNPVWATEDD YNRVCSVNPD DTESPSKKTR  60
SSSSEIGKSF FKTKLCFKFR SGTCPYAANS CHFAHSSEEL RRPPPPPNRQ ETAESGRLES  120
FAISLGPRGY GDASNVAQTL KPPNWKTRIC NKWETTGYCP FGTNCHFAHG ASELHRFGGG  180
LVEEEGKIGT STTPDTMQTG QGDTVTSLVS PGVPSQRISS AVTQKPNGVR TQRKWKGPDK  240
ISRVYGDWID DIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMap321255
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0202321e-130BT020232.1 Arabidopsis thaliana At2g35430 gene, complete cds.
GenBankBT0205531e-130BT020553.1 Arabidopsis thaliana At2g35430 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884541.11e-176zinc finger CCCH domain-containing protein 28
SwissprotQ5PP651e-130C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
TrEMBLD7LHW10.0D7LHW1_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh1_pm.C_scaffold_40013120.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.11e-128C3H family protein