PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 321705
Common NameARALYDRAFT_321705
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 190aa    MW: 21824.6 Da    PI: 9.3017
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
321705genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.9e-1062155487
             E-..-HHHHT.T-EE--HHH.HTT.........---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS CS
      B3   4 vltpsdvlks.grlvlpkkfaeeh.........ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr 87 
             +lt sdv  + +rl+l k+ ++++         +       +++++++ ++g+  e+ ++++kk+  ++++ GWk+Fvk  +L+   Df+++ + ++
  321705  62 QLTGSDVKDNqCRLMLGKEQVKKMmvdvlgkaeK---LgiHGQKVSVYGPKGEIHEMVFKMWKKDTPILMSVGWKNFVKKYKLEkHVDFLTIWMFRH 155
             67788888777************9***9866551...1445679********888888888**********************96679988765544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-1255164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-1462166IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-1263163No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDVTPDEAEV SLALLLLGQY PVFFEKEEEE EEESVSEDEL EVKISNQTYE KKGKKKRKVA  60
EQLTGSDVKD NQCRLMLGKE QVKKMMVDVL GKAEKLGIHG QKVSVYGPKG EIHEMVFKMW  120
KKDTPILMSV GWKNFVKKYK LEKHVDFLTI WMFRHKETRK ICFAIDSTRI PVKGMLSPKI  180
LNAAFKNPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15358KKKRKV
Cis-element ? help Back to Top
SourceLink
PlantRegMap321705
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883132.11e-107putative B3 domain-containing protein At4g03160
SwissprotQ9ZR157e-78Y4316_ARATH; Putative B3 domain-containing protein At4g03160
TrEMBLD7LEF91e-135D7LEF9_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_40017621e-136(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.16e-33B3 family protein