PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 321853
Common NameARALYDRAFT_321853
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 248aa    MW: 28763.8 Da    PI: 4.7816
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
321853genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.8e-35431352103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d++++e+isw+e+g+ fvv+++ ef++++Lp+ Fkh nf+SFvRQLn+YgF+kv++ +         weF+++ F+kg++ell++i+
        321853  43 FLVKTYKVVDDATTDEVISWNEDGTGFVVWQPAEFSRDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIR---------WEFSNEMFRKGQRELLSNIR 130
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
        321853 131 RRKSQ 135
                   **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.07E-3339132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.2E-5739132IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.9E-3640132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-3043132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-184366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-1894106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEDAGEHSRC SDNINDEERL SLEFMIGKST STAELEPPPP PPFLVKTYKV VDDATTDEVI  60
SWNEDGTGFV VWQPAEFSRD LLPTLFKHCN FSSFVRQLNT YGFRKVTTIR WEFSNEMFRK  120
GQRELLSNIR RRKSQQWSHN KSHYQVVSTT TTVKQEDHQR IGIDHHHEDQ RSSATSSSFV  180
YTALLDENKC LKNENELLSC ELGKTKKKCK QLMELVERYR VDDEDETDEN DDDEEDDGLK  240
LFGVKLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A3e-22411325106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A3e-22411325106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap321853
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0294520.0BT029452.1 Arabidopsis thaliana At2g41690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879948.10.0heat stress transcription factor B-3
SwissprotO222301e-151HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLD7LHA40.0D7LHA4_ARALL; AT-HSFB3
STRINGfgenesh1_pm.C_scaffold_40019100.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-149heat shock transcription factor B3