PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 321945
Common NameARALYDRAFT_321945
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 269aa    MW: 30226.2 Da    PI: 8.9047
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
321945genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-3153106255
  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              prlrWtp+LH +Fv+av++LGG+++AtPk +le+m++kgL+++hvkSHLQ+YR+
   321945  53 PRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQMYRS 106
              8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.66449109IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2949107IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-2353108IPR006447Myb domain, plants
SuperFamilySSF466892.33E-1453107IPR009057Homeodomain-like
PfamPF002492.5E-954105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAGTSSPGKC SMWLDLNREE TVEKNNEEES SVEDEEQVTS SNNVRQYVRS NMPRLRWTPD  60
LHLSFVRAVQ RLGGPDRATP KLVLEMMNLK GLSIAHVKSH LQMYRSKKLE PSSRHGFGAF  120
MSGQRSYLID MIDSRCIPYG DLRHAYNSKT VPSRVLNQDA VITNLGGNFL TRPSSWFSGL  180
CRNDQDSTEN KTLPLLEIRK TINEKRVRDE EVSSVKRLKS MSGGGIQLPE FGNCRQKPTD  240
DINTMLSLSL FSTSSGDRNI APSDIVER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-1854108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1854108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1854108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1854108357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap321945
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0746400.0AY074640.1 Arabidopsis thaliana F14N22.7/F14N22.7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881865.10.0two-component response regulator ORR24
TrEMBLD7LIV00.0D7LIV0_ARALL; Myb family transcription factor
STRINGfgenesh1_pm.C_scaffold_40020020.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.11e-154G2-like family protein