PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 322721
Common NameARALYDRAFT_322721
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 355aa    MW: 39921.4 Da    PI: 6.8316
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
322721genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.41.1e-30193248156
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
              k r++W++eLH++F++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
   322721 193 KHRRCWSQELHTHFLSALKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 248
              68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.197190250IPR017930Myb domain
SuperFamilySSF466899.63E-17191251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-26191251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-25193248IPR006447Myb domain, plants
PfamPF002492.7E-6195246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MIKNLSTMKN YNQKRERCCE FIEALEEERR KINVFQREFP LCLELVTQAI EAYKREISGT  60
TTNNLYGQSE CSEQTTGECG RILDLFIPIK HSSTSIEEVD DKDHDDEEHE SHETDIDFDD  120
KNMKSEWLKS VQLWNQSDIV VSNRQDCSQE KTETLVELIN INDEAAEKNN NIESPATTSG  180
GSGRGSGRRG QRKHRRCWSQ ELHTHFLSAL KQLGGPHVAT PKQIRELMKV DGLTNDEVKS  240
HLQKYRLHAR RPSQTTPNNK NSQTQHFVVV GGIWIPQTNH STANAVNALA SGETTTGIYG  300
PMVSPLPSEW PSHSNFGGTI LDDRSRCSNK GIFRCSSPAM SSSTRTKTKD AKVS*
Functional Description ? help Back to Top
Source Description
UniProtProbable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap322721
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0855700.0AY085570.1 Arabidopsis thaliana clone 157740 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875280.10.0transcription factor HHO1 isoform X2
SwissprotQ9LS000.0HHO1_ARATH; Transcription factor HHO1
TrEMBLD7LQU60.0D7LQU6_ARALL; Myb family transcription factor
STRINGfgenesh1_pm.C_scaffold_50002650.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136001827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.10.0G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]