PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 323305
Common NameARALYDRAFT_323305
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 276aa    MW: 31839.6 Da    PI: 8.2181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
323305genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.1e-11171041395
             TT-EE--HHH.HTT.........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
      B3  13 sgrlvlpkkfaeeh.........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
               r+++p++ a+++         +g k+ ++++t+++ +sg+ W++++  + ++++++l++GWk+ vk+ ++ e  f+ +++dg+  f  ++ 
  323305  17 FFRVYIPNQTADDMnlplvldkiSG-KPLPRKVTVKSvSSGNIWRMEM--KANGDTVFLRDGWKRIVKDENVTETIFLELEFDGSGVF--HFC 104
             5689999999999999999999744.45999******9999*******..************************99999999887666..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-1414108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-1215106IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.7E-1017109IPR003340B3 DNA binding domain
PROSITE profilePS508639.93917109IPR003340B3 DNA binding domain
PfamPF023622.4E-918103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-4180274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-6180261IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEENSSQNEL LDTVQKFFRV YIPNQTADDM NLPLVLDKIS GKPLPRKVTV KSVSSGNIWR  60
MEMKANGDTV FLRDGWKRIV KDENVTETIF LELEFDGSGV FHFCVYEYGS MCKRMRSPME  120
KEVIKVDSTE EEIEEDVLVD DEESTKGLEE SPRRGGTSRR RENLKTDSHK FYEHLGNKLN  180
PSFPVDMTQS RTRIPSLLIK DYNLTFPNMV IVRDKIGILK RRIAVWKNKS VYLNGISSII  240
RRNHVKPGDE MVFELKMVNG YHGLVHEIKV HIIKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMap323305
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0968591e-124AL096859.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T6H20.
GenBankCP0026861e-124CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875801.10.0B3 domain-containing protein REM22
SwissprotQ9STF11e-177REM22_ARATH; B3 domain-containing protein REM22
TrEMBLD7LN480.0D7LN48_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_50008490.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16649810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46770.11e-169B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]