PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 32335
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 235aa    MW: 25316.7 Da    PI: 8.2389
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
32335genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08136159327
              S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
               + C  f r G+C +Gd+C+F+Hgp
    32335 136 VPKCYAFER-GECDRGDSCRFSHGP 159
              678******.*************96 PP
2zf-CCCH23.31.1e-07179199627
              -SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
              C  f+  G C+yGd+C+F+H+p
    32335 179 CYAFQN-GNCSYGDSCRFSHDP 199
              677777.*************86 PP
3zf-CCCH19.32e-06215233625
              -SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
              C  fa+ G C +Gd+C+F+H
    32335 215 CYAFAE-GNCTRGDSCRFSH 233
              999***.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF134519.9E-2186131IPR025306Probable zinc-binding domain
PROSITE profilePS5010314.014133160IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-4133159IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6136159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4139159IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4175199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-5178200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887178200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5178199IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5179199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.558209234IPR000571Zinc finger, CCCH-type
SMARTSM003568.3212234IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4215233IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGDKTPKSPK EKKEKKEKKE KKEKKEKRER DESSGGDQSG SEEKAEKKKK VDDADDGEDS  60
DSGFKVHAKK SADELKPGKV STGNYEDVTL NCRDCNGEFV FTVGEQEFYA TKGWTNQPTR  120
CEPCKKAKKE RFGEDVPKCY AFERGECDRG DSCRFSHGPG SAAGRGGGGG RGGGGGGVCY  180
AFQNGNCSYG DSCRFSHDPN APPSRPGSRG PAGKCYAFAE GNCTRGDSCR FSHA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176GGRGGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005860.0CP000586.1 Ostreococcus lucimarinus CCE9901 chromosome 6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001418549.11e-165predicted protein
TrEMBLA4RZC41e-164A4RZC4_OSTLU; Uncharacterized protein
STRINGABO968421e-165(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP35071314