PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 324164
Common NameARALYDRAFT_324164
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 168aa    MW: 19431 Da    PI: 6.0208
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
324164genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.21.2e-2181401128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelv 100
             lp+GfrF+Pt+ e+ +++Lkkk+ g+++++ +v +e+ d+++ +P+d+p     +e++wy+F+++++++ t++ +n       W   g++++vl+   +g+lv
  324164   8 LPVGFRFRPTNCEIANYFLKKKALGQPMKARTVPEEChDVFSRHPRDFPGY--PKEEHWYYFCRKRNNQVTSNSPN------LWTPIGEETNVLDPknNGALV 102
             79****************************88888889***********43..4789*******999877655544......5***********98778888* PP

     NAM 101 glkktLvfy..........kgrapkgektdWvmheyrl 128
             g+k+ L++             +++++ k +W+m+e +l
  324164 103 GIKRRLTLIaqeeesdnicLSDEEEAPKYNWFMDEISL 140
             *********766655554437788888*******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-297157IPR003441NAC domain
PROSITE profilePS5100529.5358157IPR003441NAC domain
PfamPF023654.8E-139139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MEPTHKALPV GFRFRPTNCE IANYFLKKKA LGQPMKARTV PEECHDVFSR HPRDFPGYPK  60
EEHWYYFCRK RNNQVTSNSP NLWTPIGEET NVLDPKNNGA LVGIKRRLTL IAQEEESDNI  120
CLSDEEEAPK YNWFMDEISL PQTVADTDWV LCHIFGKTIK PIFTESE*
Cis-element ? help Back to Top
SourceLink
PlantRegMap324164
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566270.0DQ056627.1 Arabidopsis thaliana no apical meristem family protein (At3g56520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878091.11e-124NAC domain-containing protein 104
TrEMBLD7LVG81e-123D7LVG8_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_50017081e-124(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-110NAC family protein