PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 324546
Common NameARALYDRAFT_324546
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 812aa    MW: 88695.4 Da    PI: 6.7182
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
324546genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.7e-20114169156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
    324546 114 KKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 169
               688999***********************************************999 PP
2START1816.8e-573205392206
             HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT... CS
   START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg... 88 
             la++ ++elvk+a+ ++p+Wv+ss    e++n++e+ ++f++  +     + +ea+++ g v+ ++  lve+l+d+  +W e+++    + +t+e issg   
  324546 320 LALASMDELVKMAQTRDPLWVRSSdtgfEMLNQEEYDTSFTRCVGpkpdgYVSEASKEAGTVIINSLALVETLMDSE-RWAEMFPsmisRTSTTEIISSGmgg 421
             68899***********************9999999999997755499999***************************.*******9999************** PP

             ...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
   START  89 ...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                gal+lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R   lpSg+l+++++ng skvtw+eh++++++ +h l+r+l++ 
  324546 422 srnGALHLMHAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSSCRR---LPSGCLVQDMANGCSKVTWIEHTEYDENRIHRLYRPLLSC 520
             ****************************************************9.777766...**************************************** PP

             HHHHHHHHHHHHTXXXXXX CS
   START 188 glaegaktwvatlqrqcek 206
             gla+ga +w+a+lqrqce+
  324546 521 GLAFGAHRWMAALQRQCEC 539
             *****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-2088172IPR009057Homeodomain-like
SuperFamilySSF466892.92E-19102171IPR009057Homeodomain-like
PROSITE profilePS5007117.086111171IPR001356Homeobox domain
SMARTSM003891.9E-18112175IPR001356Homeobox domain
PfamPF000461.8E-17114169IPR001356Homeobox domain
CDDcd000861.80E-17114171No hitNo description
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
PROSITE profilePS5084839.403310542IPR002913START domain
SuperFamilySSF559612.75E-30313539No hitNo description
CDDcd088752.45E-108314538No hitNo description
SMARTSM002349.8E-45319539IPR002913START domain
PfamPF018524.3E-49320539IPR002913START domain
SuperFamilySSF559612.47E-17568803No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MNFNGFLDDG SPGASKLLSD IPYNNNHFSF SAVDTTMLGT TAIAPPHSRP FSSSGLSLGL  60
QTNGEMSRNG EIFESNVTRK SSRGEDVESR SESDNAEAVS GDDLDTSDRP LKKKKRYHRH  120
TPKQIQDLES VFKECAHPDE KQRLDLSRRL NLDPRQVKFW FQNRRTQMKT QIERHENALL  180
RQENDKLRAE NMSVREAMRN PMCGNCGGPA VIGEISMEEQ HLRIENSRLK DELDRVCALT  240
GKFLGRSNGS HHIPDSALVL GVGVGCNVGG GFTLSSPVLP QASPRFEISN ATGSGLVATV  300
NRQQPVSVSD FDQRSRYLDL ALASMDELVK MAQTRDPLWV RSSDTGFEML NQEEYDTSFT  360
RCVGPKPDGY VSEASKEAGT VIINSLALVE TLMDSERWAE MFPSMISRTS TTEIISSGMG  420
GSRNGALHLM HAELQLLSPL VPVRQVSFLR FCKQHAEGVW AVVDVSIDSI REGSSSSCRR  480
LPSGCLVQDM ANGCSKVTWI EHTEYDENRI HRLYRPLLSC GLAFGAHRWM AALQRQCECL  540
TILMSSTVSP SPNPTPINCN GRKSMLKLAK RMTDNFCGGV CASSLQKWSK LNVGNVDEDV  600
RIMTRKSVNN PGEPPGIILN AATSVWMPIS PRRLFDFLGN ERLRSEWDIL SNGGPMKEMA  660
HIAKGHDHSN SVSLLRASAI NANQSSMLIL QETSIDAAGA LVVYAPVDIP AMQAVMNGGD  720
SAYVALLPSG FAILPNAQAG TQRCAAEERN ANGNGNGGCM EEGGSLLTVA FQILVNSLPT  780
AKLTVESVET VNNLISCTVQ KIKAALHCDS T*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap324546
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508660.0AY050866.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds.
GenBankAY0967570.0AY096757.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876596.10.0homeobox-leucine zipper protein HDG1 isoform X1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLD7LS630.0D7LS63_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_50020900.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]