PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 325029
Common NameARALYDRAFT_325029
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 238aa    MW: 27086.4 Da    PI: 9.1793
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
325029genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.2e-1980132456
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               + ++t+ ql  Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
    325029  80 KKRLTSGQLASLERSFQEDIKLDSDRKVKLSQELGLQPRQIAVWFQNRRARWK 132
               45699***********************************************9 PP
2HD-ZIP_I/II115.14.2e-3779169292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+rl++ q+++LE+sF+e+ kL+++rKv+l++eLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd + +e+++L++ev++Lr+ l+
       325029  79 KKKRLTSGQLASLERSFQEDIKLDSDRKVKLSQELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVFREKQMLHEEVKKLRAILR 169
                  9**************************************************************************************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-1868136IPR009057Homeodomain-like
PROSITE profilePS5007116.77974134IPR001356Homeobox domain
SMARTSM003891.9E-1776138IPR001356Homeobox domain
CDDcd000861.21E-1579135No hitNo description
PfamPF000462.2E-1680132IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-1983132IPR009057Homeodomain-like
PRINTSPR000313.8E-5105114IPR000047Helix-turn-helix motif
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
PRINTSPR000313.8E-5114130IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEWSTNSNVE NVRVAFMPPP WPESSSFNSL HSFNFDPYAA GNSYTPGDTQ TGPVISVPES  60
EKIMNAYRFP NNNNNEMIKK KRLTSGQLAS LERSFQEDIK LDSDRKVKLS QELGLQPRQI  120
AVWFQNRRAR WKAKQLEQLY DSLRQEYDVV FREKQMLHEE VKKLRAILRD QGLIKKQISA  180
GTIKVSGEED TTEVSSVVVA HPRTENLNTN QITGGNQVYG QYNNPMLVAS SGWLSYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126134RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap325029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3520290.0EU352029.1 Arabidopsis lyrata At5g03790-like protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871058.11e-177putative homeobox-leucine zipper protein ATHB-51 isoform X3
SwissprotQ9LZR01e-165ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLD7LWT71e-176D7LWT7_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_60002491e-176(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-143homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]