PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 325337
Common NameARALYDRAFT_325337
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 626aa    MW: 70242.6 Da    PI: 6.3845
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
325337genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.41.4e-22230283155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              k+++ Wt  LH+ F++a++++ G +kA+Pk+il +m+v  Lt+e+v+SHLQkYR+
   325337 230 KKKITWTDSLHDLFLQAIRHI-GLDKAVPKKILAFMNVSYLTRENVASHLQKYRI 283
              6899*****************.********************************6 PP
2Response_reg74.83.3e-25181341110
                   EEEESSSHHHHHHHHHHHHHTTC.......EEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
  Response_reg   1 vlivdDeplvrellrqalekegy.......eevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                   v++vdD+++++++l ++le+++y         v ++dd+++al +l  ++ ++Dli++D  mp m+Gl+l k+i++e  +lp++v++  ++++  +e
        325337  18 VMVVDDDRVFLNILSRMLERSKYidpsvmkITVVAVDDPKKALSTLkiQRDHIDLIITDYYMPSMNGLQLKKQITQEFGNLPVLVMS--SDPNKEQE 112
                   89*****************88876666643356699*********9555666************************99*********..5667899* PP

                   HHHTTESEEEESS--HHHHHHH CS
  Response_reg  89 alkaGakdflsKpfdpeelvka 110
                    l+ Ga++f+ Kp++p++l+k 
        325337 113 SLSCGAMGFIPKPIEPADLTKI 134
                   *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.0E-1231625IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.1E-2715141No hitNo description
SuperFamilySSF521724.13E-2516144IPR011006CheY-like superfamily
SMARTSM004483.3E-2216135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.10417139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-2118135IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.39E-2419139No hitNo description
PROSITE profilePS512949.546227286IPR017930Myb domain
SuperFamilySSF466892.87E-17228287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-23229287IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-25230283IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MAFAQSFHNQ SSILRINVMV VDDDRVFLNI LSRMLERSKY IDPSVMKITV VAVDDPKKAL  60
STLKIQRDHI DLIITDYYMP SMNGLQLKKQ ITQEFGNLPV LVMSSDPNKE QESLSCGAMG  120
FIPKPIEPAD LTKIYQFALT YKMNGKSTLL TEQNHKDANV SVPQQITLIP EQANVLKTKK  180
KNCSSKSDSR TVNSTNGSCV STDGSRKNRK RKPNGGPSDD GESLLQPAKK KKITWTDSLH  240
DLFLQAIRHI GLDKAVPKKI LAFMNVSYLT RENVASHLQK YRIFLRRVAD QGFSSMLSDR  300
GIDSMFRQTH IKEPYFNCYT PFTSWYDTSL NNRSFYSKPG HGLGQSRLLS KTREPVRFNL  360
MPYNYMNRSS TYEPHHIGSG SNLTLPIQNN LSFPNQPSQN EDIRSFFEPP AVMANKIVQT  420
SQVLGFGQLG PSTISGNNFN NNMMSSYGSL TPNQPGSSHF SYGMQSFLNN ENAACNPQPP  480
ANATTQPNLA EFPQLENLDL YNDLGHTSDL PYNISNFQFD DNKQQQGEAD STKFDLPANS  540
STELNQILSL EDNGDWTFAN VNQAQSNGET SNTIAAPETN PPIFNMNPNQ NQGQDVPEFT  600
DWSFLDPQEL VDDDFMNSLF NNDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-19229289464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209231KRKPNGGPSDDGESLLQPAKKKK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap325337
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1636520.0AL163652.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871257.10.0putative two-component response regulator ARR21 isoform X1
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLD7M0G70.0D7M0G7_ARALL; Two-component response regulator
STRINGfgenesh1_pm.C_scaffold_60005570.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21