PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 325871
Common NameARALYDRAFT_325871
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 207aa    MW: 23461.8 Da    PI: 9.5156
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
325871genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.8e-33151401128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
             lp G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   +++ek+ yfF+k+++ +++++r +    +gyWk  gk++++++  g++ g++
  325871  15 LPIGYRFHPTEQELILHYLLPKAFASPLPS-SIIPVFDLFFSHPLTFPG--DQKEKQRYFFCKKREVSSNEHRIKIPSGDGYWKPIGKERPIIA-CGKTFGIR 113
             699*************************99.88***************4..4578899******************99****************.999***** PP

     NAM 104 ktLvfy..kgrapkgektdWvmheyrl 128
             +tL+fy  ++++++ +kt+W m ey l
  325871 114 RTLAFYetNKSSSNCNKTKWSMTEYCL 140
             ******4434667778*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-3910159IPR003441NAC domain
PROSITE profilePS5100536.57515160IPR003441NAC domain
PfamPF023651.6E-1916140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEVEKRIVVN GGMRLPIGYR FHPTEQELIL HYLLPKAFAS PLPSSIIPVF DLFFSHPLTF  60
PGDQKEKQRY FFCKKREVSS NEHRIKIPSG DGYWKPIGKE RPIIACGKTF GIRRTLAFYE  120
TNKSSSNCNK TKWSMTEYCL AGFASAKVFG EWAVYNVYER KGSKGRKQRK SREGDDEELS  180
CVHHFTVGSN HETGPPPPSP PTSADE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-201314013140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap325871
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0842160.0AY084216.1 Arabidopsis thaliana clone 100085 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871595.11e-154NAC domain-containing protein 41
TrEMBLD7M5Z01e-152D7M5Z0_ARALL; ANAC084
STRINGfgenesh1_pm.C_scaffold_60010911e-153(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-132NAC domain containing protein 84