PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

32755

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 137aa MW: 15065.6 Da PI: 4.5531

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
32755	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	43.7	6.9e-14	2	105	5	97
NF-YB 5 drflPianvsrimkkvlPa....nak.......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 d+ lP a + r++k+ l + +ak i k+a ec+ fi ++t+ a+d c+ kr ti+ d+l a+ + f + v+ +++ l +r++++ k 32755 2 DEDLPRAHIKRLVKHKLSTldnvDAKgqsfepnIQKEALTAYGECAKIFIHYLTATANDVCRDHKRSTISDADVLAAIEECDFGELVDDVRATLDAFRDAKRTK 105 566888888888888775322222222233333999999999*********************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.6E-29	2	125	IPR009072	Histone-fold
SuperFamily	SSF47113	2.1E-21	3	123	IPR009072	Histone-fold
Pfam	PF00808	6.0E-8	33	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MDEDLPRAHI KRLVKHKLST LDNVDAKGQS FEPNIQKEAL TAYGECAKIF IHYLTATAND 60 VCRDHKRSTI SDADVLAAIE ECDFGELVDD VRATLDAFRD AKRTKKARDA EAKETRDEGD 120 DDEVEKRDDG GGDGAA*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000587	0.0	CP000587.1 Ostreococcus lucimarinus CCE9901 chromosome 7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001418976.1	1e-93	predicted protein
TrEMBL	A4S0I1	2e-92	A4S0I1_OSTLU; Uncharacterized protein
STRING	ABO97269	4e-93	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3453	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	4e-23	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	32755