PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

327750

Common Name

ARALYDRAFT_327750

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 215aa MW: 22870.7 Da PI: 5.2679

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
327750	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.8	1.1e-35	11	106	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC+++Cv+apyf +e+ +++f +vhk+FGasn +kll +p ++r da+ +l+yeA ar+rdPvyG+vg+i++lq+q e + ++++ 327750 11 PCGACKFLRRKCVAECVFAPYFDSEEgTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQAELAYVQTQ 106 7*******************998879*******************************************************99887665544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.412	10	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-35	11	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSGSTTGSGG PCGACKFLRR KCVAECVFAP YFDSEEGTSH FTAVHKVFGA SNASKLLMMI 60 PASRRLDAVV TLTYEALARL RDPVYGCVGH IFALQHQAEL AYVQTQLSTL QGLPPPNPQN 120 NSRTEAASSS NAPPISSVDN KSNVSSASLH IPCMSQQQEE QAKEAIEVST ESVDLSTLFG 180 LEDPVDEDGD LNALAREFLS KYLTGGKCRP SSPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	4	97	4	96	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	4	97	4	96	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	327750

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473855	0.0	AB473855.1 Arabidopsis thaliana ASL22 mRNA for ASYMMETRIC LEAVES2-like 22 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879137.1	1e-155	LOB domain-containing protein 31
Swissprot	O81322	1e-131	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	D7M5R7	1e-157	D7M5R7_ARALL; LOB domain protein 31
STRING	fgenesh1_pm.C_scaffold_6002970	1e-158	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	1e-106	LOB domain-containing protein 31

Link Out ? help Back to Top
Phytozome	327750
Entrez Gene	9311111