PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 328110
Common NameARALYDRAFT_328110
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25614.1 Da    PI: 9.4671
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
328110genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.51.3e-211562249
            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
            + +n+sn qvtfskR  g++KKA+EL++LC+ae+++i+fs+ gk++ +
  328110 15 KMKNESNLQVTFSKRSFGLFKKASELCTLCGAEILMIVFSPGGKVFSF 62
            679******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.193666IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-32665IPR002100Transcription factor, MADS-box
CDDcd002651.10E-36781No hitNo description
SuperFamilySSF554551.7E-26786IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-19828IPR002100Transcription factor, MADS-box
PfamPF003196.4E-231562IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVRSTKGRQK IEMKKMKNES NLQVTFSKRS FGLFKKASEL CTLCGAEILM IVFSPGGKVF  60
SFGHPSVQDL IHRFENPNYN SIIVLTTQEK EKNKRMVLDI MKESREQRGN WYEKDVKDLD  120
MNETNHLISA LQDVKKKLVS EMSQQYSQVN VSQNYFGQSS GFIGGPNVDV GIDLFDQRRN  180
TFNYNPNMAV FPNHTPMFGY NNDGVIVPIS NMNYMSSYNF NQS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap328110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615891e-149AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankAY1412341e-149AY141234.1 Arabidopsis thaliana MADS-box protein AGL40 mRNA, complete cds.
GenBankCP0026871e-149CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ997081e-149Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875559.11e-161agamous-like MADS-box protein AGL62
SwissprotQ9FKK27e-56AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLD7MBG31e-165D7MBG3_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_70003371e-165(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142941022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-109M-type_MADS family protein
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]