PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

328561

Common Name

ARALYDRAFT_328561

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 375aa MW: 42721.5 Da PI: 7.2394

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
328561	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.6	8.2e-17	25	100	15	95
-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 l +p +f+ +h + ++e++t l++ s +Wevk+ +++s+r lt+GWkeF+ a++ ++gD++vF+++g+ f +v+ 328561 25 YLNIPVTFFLKHVERSNEQRTANLRSdASDTTWEVKI--DGRSRR--LTGGWKEFATAHDFRVGDIIVFRHEGDLVF--HVT 100 589*******666667789999987889***..99..9********************8876555..555 PP
2	B3	62.9	5e-20	272	371	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 f++ ++++ vlk+grl lp+kf+e +++++ + k++tl d++g +W v+l ++k+ r+ l++G keF kang+k+ +++v++l+++ +++ +++k+++k 328561 272 FVTLTVRPAVLKNGRLHLPRKFIEVNQMENIGMKKITLLDKHGVEWPVNLVMEKGNTRTRLGSGLKEFFKANGIKAYESFVLELVWEdKTTLPMLKFCSK 371 7788899*****************88888999*************************************************998999999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-21	8	107	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-19	10	111	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.59	11	105	IPR003340	B3 DNA binding domain
CDD	cd10017	1.40E-14	12	100	No hit	No description
SMART	SM01019	3.4E-21	14	105	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-11	26	94	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.1E-6	174	235	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-6	176	236	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.14	182	263	IPR003340	B3 DNA binding domain
CDD	cd10017	3.65E-6	182	240	No hit	No description
Gene3D	G3DSA:2.40.330.10	6.9E-16	266	371	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.84E-17	269	369	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.67E-16	271	359	No hit	No description
Pfam	PF02362	1.4E-19	272	371	IPR003340	B3 DNA binding domain
SMART	SM01019	1.0E-23	272	372	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.492	272	371	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MADPVLQSTT CPHFFQPLLP GFDSYLNIPV TFFLKHVERS NEQRTANLRS DASDTTWEVK 60 IDGRSRRLTG GWKEFATAHD FRVGDIIVFR HEGDLVFHVT ALGPSCCEIQ YVQSCNDDNL 120 DDDQEDIRNL PMEQSLKTEL EAERSLDDDD EDDNMGKFPR KKHVEKEIPE AEAKSFSSDK 180 SCFVAHVTDS NLRNDTLFLP TKFVRSDGLI KGSNKIVLMN EEIRTWTLIL KFRDSKLKSV 240 STKDCNKGKR NESGDSRQKV PSSSSSVSEY RFVTLTVRPA VLKNGRLHLP RKFIEVNQME 300 NIGMKKITLL DKHGVEWPVN LVMEKGNTRT RLGSGLKEFF KANGIKAYES FVLELVWEDK 360 TTLPMLKFCS KTKT*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MADPVLQSTT CPHFFQPLLP GFDSYLNIPV TFFLKHVERS NEQRTANLRS DASDTTWEVK  60
IDGRSRRLTG GWKEFATAHD FRVGDIIVFR HEGDLVFHVT ALGPSCCEIQ YVQSCNDDNL  120
DDDQEDIRNL PMEQSLKTEL EAERSLDDDD EDDNMGKFPR KKHVEKEIPE AEAKSFSSDK  180
SCFVAHVTDS NLRNDTLFLP TKFVRSDGLI KGSNKIVLMN EEIRTWTLIL KFRDSKLKSV  240
STKDCNKGKR NESGDSRQKV PSSSSSVSEY RFVTLTVRPA VLKNGRLHLP RKFIEVNQME  300
NIGMKKITLL DKHGVEWPVN LVMEKGNTRT RLGSGLKEFF KANGIKAYES FVLELVWEDK  360
TTLPMLKFCS KTKT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	328561

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ515263	2e-90	AJ515263.1 Arabidopsis thaliana mRNA for putative auxin response factor 25 (arf25 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872309.1	1e-174	LOW QUALITY PROTEIN: B3 domain-containing protein REM7
Swissprot	Q8H2D0	1e-124	REM7_ARATH; B3 domain-containing protein REM7
TrEMBL	D7MB43	0.0	D7MB43_ARALL; Uncharacterized protein
STRING	fgenesh1_pm.C_scaffold_7000788	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31660.1	1e-122	B3 family protein

Link Out ? help Back to Top
Phytozome	328561
Entrez Gene	9303360

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]