PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 329122
Common NameARALYDRAFT_329122
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 668aa    MW: 74403.5 Da    PI: 6.5016
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
329122genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26e-08103125326
              S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
              ++lC+f+   G C+yGd+C++ H+
   329122 103 EKLCKFWVD-GNCPYGDKCRYLHC 125
              579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.852652IPR000571Zinc finger, CCCH-type
SMARTSM003560.0852851IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6100124IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-6102126IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5103125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-6104123IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.58E-39123387IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.5E-40124387IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003205.5E-6131170IPR001680WD40 repeat
PfamPF004003.5E-4134170IPR001680WD40 repeat
PROSITE profilePS5008213.148138179IPR001680WD40 repeat
PROSITE profilePS5029421.516138387IPR017986WD40-repeat-containing domain
PRINTSPR003201.5E-5157171IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780157171IPR019775WD40 repeat, conserved site
SMARTSM003200.95210247IPR001680WD40 repeat
SMARTSM003200.32254291IPR001680WD40 repeat
PROSITE profilePS5008211.31261300IPR001680WD40 repeat
PRINTSPR003201.5E-5278292IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4294331IPR001680WD40 repeat
PfamPF004000.0049296330IPR001680WD40 repeat
PRINTSPR003201.5E-5318332IPR020472G-protein beta WD-40 repeat
SMARTSM0032014335378IPR001680WD40 repeat
PRINTSPR013563.7E-6452470IPR003293Nudix hydrolase 6-like
SuperFamilySSF558112.71E-25460624IPR015797NUDIX hydrolase domain-like
PROSITE profilePS5146214.056479625IPR000086NUDIX hydrolase domain
PRINTSPR013563.7E-6490508IPR003293Nudix hydrolase 6-like
Gene3DG3DSA:3.90.79.101.6E-23493618IPR015797NUDIX hydrolase domain-like
PfamPF002939.7E-14495611IPR000086NUDIX hydrolase domain
PROSITE patternPS008930524545IPR020084NUDIX hydrolase, conserved site
PRINTSPR013563.7E-6581605IPR003293Nudix hydrolase 6-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0016787Molecular Functionhydrolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MDLDMNGGNK RVFQRLGGGS NRPTTDSNQK VCFHWRAGRC NRYPCPYLHR ELPGPAPGPS  60
STNKRVADES GFAGPSHRRG PGFSGTANNW GRFGGNRTVT KTEKLCKFWV DGNCPYGDKC  120
RYLHCWSNGD SFSLLTQLDG HQKVITGIAL PSGSDKLYTA SKDETVRIWD CASGQCTGVL  180
NLGGEVGCMI SEGPWLLVGM PNLVKAWNIQ NNVDLSLTGP VGQVYSLVVG TDLLFAGTQD  240
GSILVWKYNS TTSCFDPAAS LMGHTLAVVS LYVGANRLYS GAMDNSIKVW SLDNLQCIQT  300
LTEHTSVVMS LICWDQFLLS CSLDNTVKIW AATEGGNLEV TYTHKEEYGV LALCGVHDAE  360
AKPVLLCSCN DNSLHLYDLP SMSDEQEAPL INGVEHKICE VLPFVDDDYG GVIVEMKTPM  420
DTKSFVAALR YSFEHWRSQG KKGVWLNLPL SHVNLVEPAV KEGFRYHHAE PTYLMLVYWI  480
PKAESTIPLN ASHRVRVGAV VLNHNKEEKY GKLRGSGNWK IPTGVVDEGE EIFAAAIREV  540
KEETGVRRSI YLYIDTEFLE ILAFCQTHES FFAKSDLFFV CLLRPTSFDI QKQDLEIEAA  600
QWMRLEDSAS QPITHKNELF KAIHRICSMK MENSYSGFSS QHITTFFDDK LGYLYLNKQE  660
DMKKHIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zb3_A5e-7337766715302Nudix hydrolase 7
4zbp_A5e-7337766715302Nudix hydrolase 7
4zbp_B5e-7337766715302Nudix hydrolase 7
4zbp_C5e-7337766715302Nudix hydrolase 7
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap329122
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520630.0AJ252063.1 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene).
GenBankBT0261220.0BT026122.1 Arabidopsis thaliana.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873500.10.0zinc finger CCCH domain-containing protein 48
RefseqXP_020873501.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLD7MG040.0D7MG04_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_70013490.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1