PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 330471
Common NameARALYDRAFT_330471
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 326aa    MW: 37677.4 Da    PI: 6.1322
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
330471genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.9e-11155192139
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                      +g WT+ Ede lv+ vk+ G ++W++Ia++++ gR +kq
           330471 155 KGQWTATEDEMLVKMVKRNGIKNWTSIAKMFQ-GRVGKQ 192
                      799*****************************.**9987 PP
2Myb_DNA-binding35.42.4e-11204238238
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                      + W++eEd +l++++k  G++ W+ Ia++++ gR+++
           330471 204 NLWSEEEDRILIEVHKIIGNK-WTEIAKRLP-GRSEN 238
                      56*******************.*********.**985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.302150201IPR017930Myb domain
SuperFamilySSF466897.19E-21154238IPR009057Homeodomain-like
SMARTSM007171.4E-5154199IPR001005SANT/Myb domain
PfamPF002493.5E-9155192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-14156201IPR009057Homeodomain-like
CDDcd001672.33E-8158197No hitNo description
PROSITE profilePS512949.927202243IPR017930Myb domain
SMARTSM007173.9E-4202242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-16202238IPR009057Homeodomain-like
PfamPF002491.7E-10204238IPR001005SANT/Myb domain
CDDcd001674.77E-8206238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MYHQNQISST PNQNSDPHNW DIQNRLFSRH PSIEIPTKNP FMGINSFPNT NVFEGFQYNI  60
TNDLEFPMTY NTQFPVTSEG ISYNMHDFQE NTMCGYTAHN QGLIIGCHEP VHDVVESQQF  120
NVSKSEGINL ISQSKRVTKE TINRRQDKKK DIIIKGQWTA TEDEMLVKMV KRNGIKNWTS  180
IAKMFQGRVG KQWHNHLGPD IKKNLWSEEE DRILIEVHKI IGNKWTEIAK RLPGRSENIK  240
SDALPPRNNA LENYISVNRE VDSITTNSEI VTTKCENIVD EVMTLNMDAT TCFYVPEQAS  300
LTWGYDFTKF HEPIDDTWML MTGWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30153238594B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes the motif 5'-TAACGG-3' in the promoter of target genes (PubMed:27681170). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner (PubMed:18695688). Together with MYB118, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:27681170}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap330471
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by LEC2 but repressed by MYB118. {ECO:0000269|PubMed:27681170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196330.0AY519633.1 Arabidopsis thaliana MYB transcription factor (At5g40360) mRNA, complete cds.
GenBankDQ4470190.0DQ447019.1 Arabidopsis thaliana clone pENTR221-At5g40360 myb family transcription factor (At5g40360) mRNA, complete cds.
GenBankDQ6533310.0DQ653331.1 Arabidopsis thaliana clone 0000013115_0000009446 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_568581.10.0myb domain protein 115
SwissprotQ1PDP90.0MY115_ARATH; Transcription factor MYB115
TrEMBLD7MJ980.0D7MJ98_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_70026980.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.11e-178myb domain protein 115
Publications ? help Back to Top
  1. Troncoso-Ponce MA, et al.
    Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.
    Plant Cell, 2016. 28(10): p. 2666-2682
    [PMID:27681170]
  2. Ettaki H, et al.
    Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents.
    PLoS ONE, 2018. 13(1): p. e0192156
    [PMID:29381741]