PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 331130
Common NameARALYDRAFT_331130
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 212aa    MW: 24210.7 Da    PI: 10.3141
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
331130genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.3e-18110197194
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
             f+k +++s+v+   +l lp +f+++h gk+  +  +tl de+g+++e  +  rk++    l++GW +F+ a++L  gD++vF+l++r+ f+ ++
  331130 110 FVKSMLQSHVSGGFWLGLPVQFCRSHLGKQ--DGVITLIDEEGEEYETIYLARKNG----LSGGWMGFAIAHNLAYGDTLVFELVRRTAFKIYI 197
             89************************6663..448***************667776....*************************999995544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-24103200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-19105199IPR015300DNA-binding pseudobarrel domain
CDDcd100177.64E-26108199No hitNo description
PROSITE profilePS5086312.125110201IPR003340B3 DNA binding domain
PfamPF023623.6E-15110197IPR003340B3 DNA binding domain
SMARTSM010195.5E-25110201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVVSKQSKYE EFRLKRVEEN KKRMEALNLQ KLSQNLNSTS VKNSPMKKRS IPRTPEKQMV  60
DVQRIQIRRR GLSKRRDLSN RVYISEEIRE EAFSRAEKFQ DELGSGHPSF VKSMLQSHVS  120
GGFWLGLPVQ FCRSHLGKQD GVITLIDEEG EEYETIYLAR KNGLSGGWMG FAIAHNLAYG  180
DTLVFELVRR TAFKIYITRV GSSGESSKDM S*
Cis-element ? help Back to Top
SourceLink
PlantRegMap331130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076478e-86AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
GenBankCP0026888e-86CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879833.11e-150B3 domain-containing protein At5g42700
SwissprotQ9FMZ41e-139Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLD7MRH41e-154D7MRH4_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_80004731e-155(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-132B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]