PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 331146
Common NameARALYDRAFT_331146
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BBR-BPC
Protein Properties Length: 333aa    MW: 37050.9 Da    PI: 9.5325
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
331146genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind349.57.4e-10713321301
  GAGA_bind   1 mdddgsre..rnkgyyepaaslken.lglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla..... 92 
                mdd g+re  r+k+  + +  ++++   +q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd++l+al+++ens++     
     331146   1 MDDGGHREngRHKAAAQGQWLMQHQpSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVtaaat 100
                999999988898886554423332212359***************************************************************99999** PP

  GAGA_bind  93 ..salpvgvqvlsgtksidslqqlse......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 184
                  sa+p+g+q+++g+k++++ +++++      pql+++a+e+re+e ++ lp++  a +a e++k+k+++r k+pk++ ++ ++k+++k+++kvkkes+d
     331146 101 nmSACPPGCQISRGVKHLHHPHMHHHhqqhhiPQLTENAYETREMEPNDGLPTSPPAGSALESAKPKRGKRVKDPKATAQTTANKRGPKNQRKVKKESDD 200
                999*****************99976679999*******************************************************************88 PP

  GAGA_bind 185 .er.......................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
                  +                       sk+++ks+++ +ln+v +De+t+P+PvCsCtG+           WqS+CCttt+S+yPLP+ +++r+aR++grK
     331146 201 dLNkimfvktthdyteedsskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGV-----------WQSSCCTTTLSMYPLPALPNKRHARVGGRK 289
                5448********************************88*******************97...........****************************** PP

  GAGA_bind 260 mSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
                mS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
     331146 290 MSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 332
                *****************88***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062179.1E-851332IPR010409GAGA-binding transcriptional activator
SMARTSM012262.2E-1621332IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDDGGHRENG RHKAAAQGQW LMQHQPSMKQ VMSIIAERDA AIQERNLAIS EKKAAVAERD  60
MAFLQRDTAI AERNNAIMER DSALTALQYR ENSMVTAAAT NMSACPPGCQ ISRGVKHLHH  120
PHMHHHHQQH HIPQLTENAY ETREMEPNDG LPTSPPAGSA LESAKPKRGK RVKDPKATAQ  180
TTANKRGPKN QRKVKKESDD DLNKIMFVKT THDYTEEDSS KHILIGSKSD WKSQEMVGLN  240
QVVYDETTMP PPVCSCTGVW QSSCCTTTLS MYPLPALPNK RHARVGGRKM SGSAFNKLLS  300
RLAAEGHHDL SNPVDLKDHW AKHGTNRYIT IK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap331146
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0885640.0AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence.
GenBankAY3805720.0AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870282.10.0LOW QUALITY PROTEIN: protein BASIC PENTACYSTEINE6
SwissprotQ8L9990.0BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLD7MS410.0D7MS41_ARALL; GAGA-binding transcriptional activator
STRINGfgenesh1_pm.C_scaffold_80004890.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.10.0basic pentacysteine 6