PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 332869
Common NameARALYDRAFT_332869
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 147aa    MW: 16119.2 Da    PI: 8.9398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
332869genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-1787137155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
             +++kGVr ++ +g+W AeI+dp     +  +r +lg+f tae+Aa a+++a+ +l g
  332869  87 KKHKGVRKKP-SGKWSAEIWDP-----SmrARRWLGTFPTAEMAAHAYDEAAAELVG 137
             589****999.7*********9.....335**********************99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-2288140IPR001471AP2/ERF domain
SMARTSM003804.9E-2388146IPR001471AP2/ERF domain
PROSITE profilePS5103220.44288146IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1588139IPR016177DNA-binding domain
PfamPF008471.3E-1088137IPR001471AP2/ERF domain
PRINTSPR003671.1E-689100IPR001471AP2/ERF domain
CDDcd000186.85E-1591123No hitNo description
PRINTSPR003671.1E-6111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDYSKNVQNE NFTLVSQPSY LTRDQEHGIM VSTLRQVISN TGGDTSSSHW IASEALPPPD  60
AGPCPLCGVT GCYGCAFPRH EEVKKEKKHK GVRKKPSGKW SAEIWDPSMR ARRWLGTFPT  120
AEMAAHAYDE AAAELVGKRS ARRGTN*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap332869
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266404e-99AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBankCP0026884e-99CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865034.11e-108putative ethylene-responsive transcription factor ERF121
SwissprotQ9FGC93e-83EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLD7MLD01e-106D7MLD0_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_80022121e-107(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.15e-68ERF family protein